RnoINT0137621 @ rn6
Intron Retention
Gene
ENSRNOG00000010451 | Slc34a3
Description
solute carrier family 34 member 3 [Source:RGD Symbol;Acc:708551]
Coordinates
chr3:2453029-2453933:-
Coord C1 exon
chr3:2453890-2453933
Coord A exon
chr3:2453153-2453889
Coord C2 exon
chr3:2453029-2453152
Length
737 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ACCTGCCTTGCCCTCAGCAGATC
3' ss Score
7.61
Exon sequences
Seq C1 exon
CGCTGGGCCTCCTCCCCGCTGGTGCCCCCTCACCACACATGCAG
Seq A exon
GTAGGAGCTCCGAGGACTAGACCAAGCTCTAGGACACTAAGCCCACAGTTTAGTGAGCATCAGGTCCAGGGTTTGGCCAGCATTCTGAAACCCCAGGACCTTAGGGCAAGTGAGTCTAAAGGCAGGCTGGAGGTAGGGGACACGAAGGACCTCTGGGCCTGAACCCAAGCACTGAGGAAGGGGCCAGGATAGACTAAGATTCAAAGAGTTCCAGACCCAGAAGCCCATGGAGCCAGGGCTGCCAGGTGGGCCCTGACGTGGGTAGGGGGCTCCCAAGGTCTGCTCCGGTCTGGTGGGGGGGGGGGCTCTTATCAAGCAAAGACGTCACTTGTTTGGTATCAAATACCAAAGTCTAAGCTGGACCATCTGCAGTGTCCTTACTGACAATTGATAGGCAAAATCCCAGGGTTCTCTAGCTAGCCAGCACTCCAGAACCCTGTACCCTCAGTCAGTTGTCAAACTTCCTTTCAGCAAAGACCAGTGAGGGACCTGGGGAGCCAGTGTCCCGTTTCTTCTGCTCCCTGAAACTAGACTGGGCTCATCTGATAACCACCGGAGGTCACCGTATCCATCTGTCTGTGGTCAGAGGGAAGGGAGAGACCTGCAAGATGTGGGGTGTGGGGGAGAGCTGCAGCTGGGGTTTCAGGTCAGGGGCCTGACTTTAGCCTGCTTGTTGGGATAGAGAGTAGAGTAGGAGGAACAACCAACCCGTAACTTACCTGCCTTGCCCTCAGCAG
Seq C2 exon
ATCTAGGATTGGGCCTGGGTCTTCCACTTCTTGAAATCCATGCCGAATTCCCTTGCTGGCGACCAGGTCCCCAACCCTACTCTGGATGCAATTGGCCTGGTGGACTGGAGTCTGAGAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010451:ENSRNOT00000014060:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.241
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]