MmuINT0146281 @ mm9
Intron Retention
Gene
ENSMUSG00000006469 | Slc34a3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:MGI Symbol;Acc:MGI:2159410]
Coordinates
chr2:25088823-25089727:-
Coord C1 exon
chr2:25089700-25089727
Coord A exon
chr2:25088947-25089699
Coord C2 exon
chr2:25088823-25088946
Length
753 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TACTGCCTTGCCCTCAGCAGAGC
3' ss Score
4.93
Exon sequences
Seq C1 exon
TGCTGGTGCCCCCTCACCATACATGCAG
Seq A exon
GTAGGAGCTCCTAGAACCAGACCAAGCTCTAGGACACTGAGTCCAGAGATTAGTGAGCATCAGGTCCAGGGTTTGGGCATCATACGGAATCCCTAGGACCTTAGGGCAAGTGAGAAGAACCTAGAGGCAGGCTGGAGGGAGGGGACACAAAGGACCCCTGGGCCTGAGCCCAATCACTGTGGAAGGAGCCAGGGTAGACTAAGATTCAAAGAGTTCCAGATCCAGAGCCCATGGGGCCAGAGCTGCCAGGACATGGGCAGGGGGCTCCCAAACTCTGCTCCTAAGTCTGGGGGGGGGGGGGGGCTCTTATCAAGCAAAGGCGTCACTTGTTTGGTATCAAATACCAAAGTCTAAGCTGGGACCATCTGCAGTGTCCTTACTGACACTTGATAGGCGAAATCCCAGGGTTCTCTATCTAGTCAGCCAGTGCCCTAGAACCCTGTACCCTTAGTCAGCTGTCAAACTTTCTTTCAGCAAAGACCAGTGAGGGAGCTGGGAAGCCAGTGTCCCATTTCTTCTGCCCCCTGAAACTAGACTGGGTTTGTCTGATAACCATCCGAGGTCACCGTATCCATCTGTCTGTGGTCAGAGGAAAAGGAGAACCACCAAGACCTGCAAGGTGTGGGGGGGCAGGGGTGTGTGTGGTGGAGCAGCAGCTGCGGTTTCAGGTCAGGGGCCTGACTTTAGTCTGCTTGGTGGGATAGAGGGTGGAGTAGGAGGAACAACCAACTTGTACTGCCTTGCCCTCAGCAG
Seq C2 exon
AGCTAGGATTGGGCCTGGGTCTTCCCCTTCTTGAAATCCATGCCGAATTCCCTCGCCGGTGGCCAGGTCCCCAACCCTACTCTGGATGCCTTTGACCTGGTGGACCGGAGTCTGAGAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006469-Slc34a3:NM_080854:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.207
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: