HsaINT0152521 @ hg19
Intron Retention
Gene
ENSG00000198569 | SLC34A3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:HGNC Symbol;Acc:20305]
Coordinates
chr9:140125209-140126239:+
Coord C1 exon
chr9:140125209-140125390
Coord A exon
chr9:140125391-140126112
Coord C2 exon
chr9:140126113-140126239
Length
722 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GACACGCGCGTCCCCCCCAGCAG
3' ss Score
5.08
Exon sequences
Seq C1 exon
ATGGAGACAAGGCCTAGGGGCCTTGGGGCCAGGAGGGTACCCCCGTGAGGGCCTGGGCTCCTGGGTAAACATTAATGGGCTCAGTACCCAGCAGGTCATGTGCGCGATCAGGGGATCTTTGACCTGCAACTGCTCCCGCCCCGTGTCTCCTCCCTGCAGGTGCCCCCTCACCACCCACACAG
Seq A exon
GTAGGAGCTCCTAGGACCAGGCTGAGGCCCAGGGACAGTGAGGCCGAGGCTGGGTGGCCTCCAGGCCAAGGGCTTGGGCCCCATCCTGAGTCTCCAGGACCCAAGGGCAAGAGACGCCAGGCTTGGGCAGCAGGAGGGAGGGTGAGGCACAGGACGCCTGGACCTGAGCCCAGGGCACTAGGTGGAGGGGTCCAGGTGGGGGGCCCCAGGGGTGGGGTGACCAGGCCCAGGAGGCTAAGGCAGCAGCTTCGGGGCCAGGAGCCTTGAAGTGGTGTGAGGACCCCACCTGCTCCCCATCACCAGGGCGTGGGGCCCTTATCAAGCCGAGACGTCACTGTTTAGTATCAAATGCCAAAGTCTAAGTCGGGACCATCCACAGTGTCCCCGATGACACCAGATAGGGGAGGTCCCCAGGTTCCCCAGCTCATGGCCTGCACCCTCGGCACTAGCCTTCCAGTCAGGACCAGCAAGGGAGCCGGGGAGCTGGAGCCCCTTCGAGTCTACCCCTGAAACTGGACTGGGCTCGCCTGACAACTGCCTGAGGTCATTGTAGCCATCCCCCTGTGGATGGAGAAAGGGGGATGGTCACTGAGGCCTGCAGGGCGTAGAGAGGGAGGGTGGCGGCCAAGGGCTCAATTCAGGGGACCCAGGGGTGTGAATCCAGCTTGTGAGGACAGGGCCGGGGCAGGAGGAAATGTCTCTGACACGCGCGTCCCCCCCAG
Seq C2 exon
CAGATCTAGACCTGGGCCTGGGTCTGTCCCTGCCCGAAATCCATGCCGAGTTCCCTTCCCGGCAGCCAGGTCCCCCACCCCACTCTGGACGCGGTTGACCTAGTGGAAAAGACTCTGAGGAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198569-SLC34A3:NM_001177317:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.345
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACAAGGCCTAGGGG
R:
TCCTCAGAGTCTTTTCCACTAGGT
Band lengths:
302-1024
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)