MmuINT0146281 @ mm10
Intron Retention
Gene
ENSMUSG00000006469 | Slc34a3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:MGI Symbol;Acc:MGI:2159410]
Coordinates
chr2:25233303-25234364:-
Coord C1 exon
chr2:25234180-25234364
Coord A exon
chr2:25233427-25234179
Coord C2 exon
chr2:25233303-25233426
Length
753 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TACTGCCTTGCCCTCAGCAGAGC
3' ss Score
4.93
Exon sequences
Seq C1 exon
AGGATGACAAGGGTCTGAATAAGGCCTTGGGCCAGGCAGGGTCTCCCCTTGGGGGCCCCAGCTCCTGGGTAAACATTAATGGGGCTCCACACATAGCAGGTCATGTGCGCACCCGACAGATCTTTGACCTGCAGCTGTTCCCTCTGTGCCTCCTCCCTGCTGGTGCCCCCTCACCATACATGCAG
Seq A exon
GTAGGAGCTCCTAGAACCAGACCAAGCTCTAGGACACTGAGTCCAGAGATTAGTGAGCATCAGGTCCAGGGTTTGGGCATCATACGGAATCCCTAGGACCTTAGGGCAAGTGAGAAGAACCTAGAGGCAGGCTGGAGGGAGGGGACACAAAGGACCCCTGGGCCTGAGCCCAATCACTGTGGAAGGAGCCAGGGTAGACTAAGATTCAAAGAGTTCCAGATCCAGAGCCCATGGGGCCAGAGCTGCCAGGACATGGGCAGGGGGCTCCCAAACTCTGCTCCTAAGTCTGGGGGGGGGGGGGGGCTCTTATCAAGCAAAGGCGTCACTTGTTTGGTATCAAATACCAAAGTCTAAGCTGGGACCATCTGCAGTGTCCTTACTGACACTTGATAGGCGAAATCCCAGGGTTCTCTATCTAGTCAGCCAGTGCCCTAGAACCCTGTACCCTTAGTCAGCTGTCAAACTTTCTTTCAGCAAAGACCAGTGAGGGAGCTGGGAAGCCAGTGTCCCATTTCTTCTGCCCCCTGAAACTAGACTGGGTTTGTCTGATAACCATCCGAGGTCACCGTATCCATCTGTCTGTGGTCAGAGGAAAAGGAGAACCACCAAGACCTGCAAGGTGTGGGGGGGCAGGGGTGTGTGTGGTGGAGCAGCAGCTGCGGTTTCAGGTCAGGGGCCTGACTTTAGTCTGCTTGGTGGGATAGAGGGTGGAGTAGGAGGAACAACCAACTTGTACTGCCTTGCCCTCAGCAG
Seq C2 exon
AGCTAGGATTGGGCCTGGGTCTTCCCCTTCTTGAAATCCATGCCGAATTCCCTCGCCGGTGGCCAGGTCCCCAACCCTACTCTGGATGCCTTTGACCTGGTGGACCGGAGTCTGAGAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006469:ENSMUST00000006638:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.172
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGACAAGGGTCTGAATAAGGC
R:
GCATTTCTCAGACTCCGGTCC
Band lengths:
306-1059
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types