HsaINT1041999 @ hg38
Intron Retention
Gene
ENSG00000198569 | SLC34A3
Description
solute carrier family 34 member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
Coordinates
chr9:137230933-137231787:+
Coord C1 exon
chr9:137230933-137231079
Coord A exon
chr9:137231080-137231663
Coord C2 exon
chr9:137231664-137231787
Length
584 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
ACGCGCGTCCCCCCCAGCAGATC
3' ss Score
6.29
Exon sequences
Seq C1 exon
ACACAGGTAGGAGCTCCTAGGACCAGGCTGAGGCCCAGGGACAGTGAGGCCGAGGCTGGGTGGCCTCCAGGCCAAGGGCTTGGGCCCCATCCTGAGTCTCCAGGACCCAAGGGCAAGAGACGCCAGGCTTGGGCAGCAGGAGGGAGG
Seq A exon
GTGAGGCACAGGACGCCTGGACCTGAGCCCAGGGCACTAGGTGGAGGGGTCCAGGTGGGGGGCCCCAGGGGTGGGGTGACCAGGCCCAGGAGGCTAAGGCAGCAGCTTCGGGGCCAGGAGCCTTGAAGTGGTGTGAGGACCCCACCTGCTCCCCATCACCAGGGCGTGGGGCCCTTATCAAGCCGAGACGTCACTGTTTAGTATCAAATGCCAAAGTCTAAGTCGGGACCATCCACAGTGTCCCCGATGACACCAGATAGGGGAGGTCCCCAGGTTCCCCAGCTCATGGCCTGCACCCTCGGCACTAGCCTTCCAGTCAGGACCAGCAAGGGAGCCGGGGAGCTGGAGCCCCTTCGAGTCTACCCCTGAAACTGGACTGGGCTCGCCTGACAACTGCCTGAGGTCATTGTAGCCATCCCCCTGTGGATGGAGAAAGGGGGATGGTCACTGAGGCCTGCAGGGCGTAGAGAGGGAGGGTGGCGGCCAAGGGCTCAATTCAGGGGACCCAGGGGTGTGAATCCAGCTTGTGAGGACAGGGCCGGGGCAGGAGGAAATGTCTCTGACACGCGCGTCCCCCCCAGCAG
Seq C2 exon
ATCTAGACCTGGGCCTGGGTCTGTCCCTGCCCGAAATCCATGCCGAGTTCCCTTCCCGGCAGCCAGGTCCCCCACCCCACTCTGGACGCGGTTGACCTAGTGGAAAAGACTCTGAGGAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198569:ENST00000361134:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.345
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGAGCTCCTAGGACCAGGC
R:
TCATTCCTCAGAGTCTTTTCCACT
Band lengths:
262-846
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains