HsaALTD1042865-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000198569 | SLC34A3
Description
solute carrier family 34 member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
Coordinates
chr9:137230838-137231787:+
Coord C1 exon
chr9:137230838-137230938
Coord A exon
NA
Coord C2 exon
chr9:137231664-137231787
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ACGCGCGTCCCCCCCAGCAGATC
3' ss Score
6.29
Exon sequences
Seq C1 exon
CAGTACCCAGCAGGTCATGTGCGCGATCAGGGGATCTTTGACCTGCAACTGCTCCCGCCCCGTGTCTCCTCCCTGCAGGTGCCCCCTCACCACCCACACAG
Seq A exon
NA
Seq C2 exon
ATCTAGACCTGGGCCTGGGTCTGTCCCTGCCCGAAATCCATGCCGAGTTCCCTTCCCGGCAGCCAGGTCCCCCACCCCACTCTGGACGCGGTTGACCTAGTGGAAAAGACTCTGAGGAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198569-0-3,1-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.345
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCAGGTCATGTGCG
R:
TCATTCCTCAGAGTCTTTTCCACT
Band lengths:
218-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains