RnoINT0138504 @ rn6
Intron Retention
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20491358-20494113:-
Coord C1 exon
chr14:20494045-20494113
Coord A exon
chr14:20491532-20494044
Coord C2 exon
chr14:20491358-20491531
Length
2513 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTCTTCCCCATTCCTCCCAGTTC
3' ss Score
7.88
Exon sequences
Seq C1 exon
TTTATCCCCATGCCTGTTCTGTATGGCGTGTTCTTGTATATGGGGGTGGCCTCACTGAACGGTGTGCAG
Seq A exon
GTAAGCTTTCCCAGCTGTCAGAGCAAGCCCCATGCATTTCTCAAAGTAGAACTCGACCAGTGATAGATCTCGGACGGAGGCACTAATCATTAACTAGGGACTCTTTCAAATACATTTATTTTCTACTTCCTCTACATTTTACCTGCTTTGCATTTCTGAGGTAATCCGACAAAGCTAGCTGGTGTCAACAAATGATATCCTGAGTGCCCATTACTGAAAAGGGATGCTGTGTTATTTGGGGAGGAAATGAGTTACTGTTTCCACCACCAACACCTTCTCCCCTCTCCCTTCTCCCTCCCCTCCCCTCCCCTCTCTCCCTCCTCCTCACCTCTTCCACCTCCTCTTTCCCCTTCCTGCTCTTCCTTTGTTCTCTTATTCTTTTCCCGTCTCTCTCTTACCTCACCTTATTTTCTCTTAAGCTAGATCCCCACTGTGTCCTCAGGGTGGTGTTTGTGCACTTGCCTGACCCCCTTACCCACAGCCCGCCATCCCGCACTGCACACACCTGAACTCACTGATCAAAAGTTTTGCAGCAATCAGCAATTAAAACAAACACGTAGTAGTTAACTGCGTCCATCAATAACTTTCAGGTGTTCACAACTTCAGTTAAAATGACCGTCCTCCTGCCCCTGTCCCCGCCCCGCCTCCCTAGCCCCTGCCCCAAGCCCCCCCACCCCCCTGCTCTACTTTTAAGAAATCTACTAAGCAAAACTGTGTGAGGGACTTTGCCTCTCAATGGAGGTTTAATTTAATTGGCACCAGGAAACTGGAAGTTCCGCCACTTTCTGGCACCCTGTTAATTGCAGCCTTATTAAGCTAGCTCTCAGTAATGTTTTAATGGGAAAAGACTGTGTGTTCCGTGAACATGCTAAGAATCCATTTGAACTCCTTCGAAACAGCCCTAACTTTCGTTTATTACATTTATATTAACTTGGTTTTAAAGTCAGATGGATCTGGGCAAATGCCAGACCCCCCCCCCCCAAAAGCCCAGCTAAGCTACTTTACTATTCCTGGTTTTGGTCCAATAGAAGGGTTCTTCCTCGCTGGAATACTTGTTAGGAAACGCAAAGCAGCTCTTCATGGGCTGCACTAGGTGACTGAGGGGCTTTTTGTTTTGATTTTTGTTTATTTTTTGTTTCATTTTGTTTGTTGGTGGTTGTGGTTTTTGCCAGACAACTATTCAGGAAGTACAACTTGGTAAAATATTTTATTTTTACCTGCTATTATAAATACTTCTTCCTCCTCCTAAGTGGGAAAAATACGAGTATTTTACGCCTAGGACCAACAGTTAATAGTTTTAGTTTGCCCTTAAGGATCCAGAGGTTTGTGTTGGGTGTTCCAGGGGCTTCATCAGTGGCTGGAACTGAACACCTGTCTATGAAGAGAAGAAAAGAACCAGTCATCCCATAATGCTTGGCGGAGAGCATCGTAGGGCCAGCTAGTGAGCTGTGTCGCTCCTCACGTGTTATCGTCCCAAACACCTTTTCAATTTTCTTCATTTTTCTCTTCGTTCTTTCTCTTTTAGACCCTTTTGATGCGATTGTTTAGCGAGGAAAAAAATGAAACCTAATCTTTACAGAGAAGAAAACGTTCTGAAGGGAGAAAGAAAAGCTTCAAATAGGCAGAGGATCCGGAGAAAGTTATGATGAAGTCACTTACTTTTCCTGAGTTCTTAGGATTAGTCAGCTCAACATCTGCCCGTGCGGTGTCTCCCTCTGAGGGCTCTGGGATGAGTTACTGAGCACCATCTAGCTCCCCCTCAGGGTGTCAGCTCAGTACTGCATCTCTGAGGTGCGCCTGGCACAAACATCCGCCATTATCCTTCCAATTCCTGGTCAATACATTGCTCTGTTAACCATTCTCGGCCTCTCCTGTCTTGTGGTCTGTGGCTTGAAACTCACAGTAATGTTCACAGAGCTTTTCTCTGGGAAGAAATGTTAATACACTGGTGGGTATGGATGTGTTAGTCAAATTATAACCTAAAGAAAGTGGGACTTGGGTAATCTCCATGATCCCGTTTTTAAGTTGGACGGTTCCTTTATCTCCGTAGACCATGTCTGATGTGCCCATAATGTGGTTTTTTTTCTCTCAGACAGGATAACTGAGGCAGGAGCAGAAGCAAGAGTTAGGAATTTCCCCTCACCATAGAGTACCAAAATAGGTGCAAAATCCTCCGTGTTGACAAGCAGAGAGTAGAAATAGAAGGCAGAGGACGAACAGCTAGAATTTAAGATTGCCTTGTGTCTTTAACCTTTGATGTCCACTTTATCTTATGTACCTGCTCAACATTTCTGAAAAAAAAATCAGCAAAAATTAGAAGACAGGTAGTGTGATCTGACTGTGCCTACATAAATCCCCTACTCTCTAACCCCGGCTTTGTCCTTTGAAGAGGACATTGCTTGCCTGAAATATACAATATAAATCACTTGTGTCTGGTTAAGCAGAGAGGAGATGGCTCGACTGGCTCTTCAGATAATAATACATTGGTTTTTTTTCTTCCCCATTCCTCCCAG
Seq C2 exon
TTCATGGACCGTCTTAAGCTGCTTCTCATGCCCCTGAAGCATCAACCTGACTTCATCTACCTGCGCCACGTCCCCCTGCGCCGAGTCCACCTGTTCACCTCCCTGCAGGTGTTGTGCCTGGCTCTGCTCTGGATCCTCAAGTCCACAGTGGCTGCGATTATTTTTCCAGTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134:ENSRNOT00000004391:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.2=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=PD(6.5=58.6),PF103594=Fmp27_WPPW=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]