RnoINT0138524 @ rn6
Intron Retention
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114982928-114985497:+
Coord C1 exon
chr4:114982928-114983041
Coord A exon
chr4:114983042-114985335
Coord C2 exon
chr4:114985336-114985497
Length
2294 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
TCTCCACTTGCTCTACTCAGCCC
3' ss Score
5.6
Exon sequences
Seq C1 exon
GTCCGAACCCTGGTGGCTGACTTCTCCATTGTTTTCTCCATCCTGCTGTTCTGTGGAATCGATGCCTGTTTTGGCCTGCAAACCCCCAAGCTGCACGTGCCTAATGTCATCAAG
Seq A exon
GTTTGCCCCTTGACCCTACCCTGGGCTGCCATTTCCCTCTGCCTGCCTCCTACCTGAAAACTTCTTCTTTATACTCGTCAAACTTCCTCTCTCAACCAGGAACCCTGTGTACTGCCTTTTGTGTTTCTGCCCACAGGTGGTCATTTGAGCGGTGGGTGGGGGCATGTGCACCTTAATCTATGGCTCTGTGCCCTCAGAGTGGGAAAGGTTCTGGAACCTTCTCTCCAGTCAGCTGAAGCCTCTGGGTTCTATTAGAGGCTTTCTAATTTCCCTCAACTGCCAGTTTGGCCAACTGAGGGCCAGCTGTTCCAGGTGACTCTTAGAATGGTTGTCCCCTAAGTGTAGCACTGTACAAGTGTCATATTGTTCTGGGTGGGCATCCTCATGGCCCTGTGCTCCTTCACCAGGCTCCCCTGGTATGTGGCTGCCATAGTCATCTCCATCACACAAACTGACAGCCTCAAGATGGAGACAGGGACCAGTGCCCTGGGGGAGCAGCCCCACTTCCTGGGGGTTATGTAGGAGGAAACTTGAAACTGCAGATTCTCTGCCAGGCATGGTGGCTGGTGGCACTCTGGAGACAAATGGGGACGAATCTTTGTGAGTCTGAGGTCAATGTGATTTACATAGTGAGTTCTAGGACAGACAGGGCTATATATAGTGAGACCCTGTTTCATGAAGAAGAGGAAGAAAAGGAAGAGGAGGAGGAAGAGGAAGAAAAGAAAAAAAGAAAAAGGGGAACTAGTCTGGATAGAATATATGAAAGATGAATTTTTAAAAAAAGATTTCTAGGGGAAATTCTAAAGAAGGAAAAAAATAAATCTTTTTTCTTGGGGGAAAAAACATCATCACCACTAACAGTAACAAAAACCAAAAGCCAGATTCTAATAGATTCTCAGTCCTATCCTAGACCTCTGGAATTGGAAACACTGAGGAGGAGCCTTTAATGAGTTCTCCACATGATGCTAGGCGTGCTTGAAGTTGAGGTCTATGATTCAAAACTTGCTCATTTTTAATTGGATGAGAGGCCTCTATGGGGGAAGGTGCTTGCTGCCAAGGCTGAGAACCTGAGTTCAAACCCTGGGACACACCTGGTAAAAGAGAGAATCTCCTCTCCAGGTTGCTCTCTGATCACCACACATGTACCAGGTTTCTCTATAGCACTGGCTATCCTGAAATTCACTCTGTAGACCAGGCTGGCCTCACACTCAGAGAACCACTTGCCTCTGCCTCCCGGGTGGTGGGACCAAAGGTGTGTGCCACTATGCCTGGCTTCAAAATATATATTTAAAGAAAAGAAAAGAAATAATTCATCCAGAAGTGATGATTTGCTTATAGCTAACCTCAAGCCCTCCCAGACACACCAACTACCAACCAAAGTAGGGGATCTGAGTCTAGGTCCTGCCTTTGAGGTAGTGTTAGCCTTAGAACAAGCGCTCTGGTTCCTGGAAGCCAGGGGACAGCTGCAGGACCATGTGCACACTAAACACACACACACACACACACACACACACACATGCACGCATGCACGCATGCACGCATGCACGCATACACATACATATATACACCACACACATATATACACATACACACATATACACATACTCATACACACATATATACACACACATATACACACACACACGCACGCATACACATACATATATACACAACACACATATATACACATATGCACACACATATATACACATACACACACATATATACACATACACATATATACACATGTACATATATACACATGCAAACATATATACACATGCACGCACATACACACACATATATAACACACACACACACACACACACACACACACACACACACACACACACCTTCCTCTTTAAATGTCCACCTCTATACAAGTGGTTCTTTATTCTGGCTTTCACCCACAGCTCTCAGAGCTCCTTAGGCAATAGGCTCTGCAGAGGCAGCCCTGGGCTTATCCAGTGATTTATTCTGTCAGGCCTCTTTGGCCTTTTGTCTTACTGTGGTGAGTGGCCGTGTAAGCCCTGCTATCTGCCCTCTGAGCTTCACCTGCATTTCCAGGGAGGTGCAGCCTGTCAGGTTCTGTTTAGTTCTCTAGCCCCATTGGGTCTGTGCTCCTTCCCTGTCTGCCTCTGACTCTTTAAAGTTGCAAGCACTTAGCATCTTTAGGGGAAAATGTTGTAGTTGAGAAGTGCCTCCAGAAGGGGAAGGAGAGTGGGAAGGTGGGGGTGTGGGCGAGTATCTGGACAAGGGAAAGAGGAACAGGCCTCTCCACTTGCTCTACTCAG
Seq C2 exon
CCCACAAGGCCTGACCGAGGCTGGTTCGTTGCCCCCTTTGGGAAGAATCCTTGGTGGGTGTACCCTGCCAGCATCCTGCCGGCCCTGCTGGTGACCATCCTGATCTTCATGGACCAGCAGATCACTGCTGTCATTGTCAACAGGAAGGAGAACAAGCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378:ENSRNOT00000014249:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(14.2=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]