RnoINT0144096 @ rn6
Intron Retention
Gene
ENSRNOG00000005903 | St14
Description
suppression of tumorigenicity 14 [Source:RGD Symbol;Acc:69288]
Coordinates
chr8:32248214-32249908:-
Coord C1 exon
chr8:32249811-32249908
Coord A exon
chr8:32248324-32249810
Coord C2 exon
chr8:32248214-32248323
Length
1487 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CATAGCATCTCTCTGTGCAGGTG
3' ss Score
8.64
Exon sequences
Seq C1 exon
GCTGTGGCGGCCTTTTGAGTGAAGCCCAAGGGACGTTTAGCAGCCCCTACTATCCAGGCCATTACCCGCCCAACATCAACTGCACATGGAATATCAAG
Seq A exon
GTAGGAGGGGGTGGCGGTGAGTGCCACAGGACTTGAGGAAAAGCAGGAGGGGAAGATGACGTTAGCGACCCAAAGAGTCCCGTTAAGGGGACCCACAAGACTAGGCTAGCTACCAGCCACATCCAGACTTACGCCCTAGCTCTTTGGTTGGGAACGGAGAGGACCTGGGCTACTTCCTTGTCGTCTCTGCGACCGCTTGCTGCTGGGTAAAGTGAGGCTGAGGCTCTGTTTCTAAGAGGTGTTGTCAAGACGACCTCTCAGAAAGCGAGAAGAGAGCAAGCCCTCGCATAGCGGCAGCGCCTCTGGGTGCCGCTCGCATCCTCCAATCGGAGGTCTTTCCTTAAAGATGCCGAGACACCATCCTAGCCTTTCAAAGTAATGGAGTACAAATCCCCCACTCATTCATTTCCAAGTTGCAGTTACCCGCGGAAAGTGTCAGGCGGAGGACTCCTGGAATAAATAGGGGCGGGAAGAATGTGTCCAGTTGCCCACGCTCGGTGTTCTGCTTGACTCTTAGTTACTTAATACCCTTCGGGCTGTCACACTCACCGTGTGTATCACAGGGCTTGCATTCAAGGAACTCTTACTTAATAATGGACCTCAAATAATAGCTCTTTTGGATAAACCACAGAAAAGCTAGAGAGTCCTTCCTGCGGGTGAAAAATGTAAAATTTTGGTATCACGATTATCGTGATAAAACCGCTATGTTGAGGGTATTAAGACTTGTAGACCATTGCGTTAGTGAAATAAGCCAGGCACAAGAAAGACAAGGGTCACATGACCTCACTCATAGATGGAATCTCCACAGGTTGGCCTCTTAGAATCGAGAGAGTAATGGTTACCAGAGAGGTTGGGAGAGTAGGGAGAAGGGGTGGGAGAAGCAGATTAAGGACTGGGGGGATGATGTTCAGTTAGACAGGAGCCAGGCGCTCTGCTGTGTATCACAGAGGGACTGACTAGGGGTCCTGGTAACTACTGTAGACCTCAAAAAGCCAGAGGAAAGTCTTTACTATTTAAAAAAAAAACATGAGTGTTTGAGGGGGTAAACATATTTAATCTGATTTAAGTATTATGCAGTAATAATGTATATAATTTTATCATCATTATGCCAGTTAAAATAATTAAAACTTAAAAACAGGAGAGCAGGGCTGGAGAGATGGCTCAGTGGTTAAGAACACTGACTGTTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATTTGTAGTGGGATCTAATGCCCTCTTCTGGTGTGGCTGGAGACAGCTACAGTGTACGTGTAATAAATAAATAAATCTTTAAAAAAAATAAAACCAGGCGAGCTGTTTATCATATCTATGTATGTATATATGTAAGAGAAGTCTTGGTGTGCATGGGGTTCGTTCAGGACCCCATTCCCCTCCCGTGACTATCCCTTGTGTTAAGAAGTACCAAAGAGGCCAGGGTCCCCATAGCATCTCTCTGTGCAG
Seq C2 exon
GTGCCCAACAACCGGAACGTGAAAGTACGCTTCAAACTCTTCTATCTGGTGGACCCCAACATACCAGTGGGAAGCTGCACCAAGGACTATGTGGAGATCAACGGGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005903:ENSRNOT00000009139:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(29.5=93.9)
A:
NA
C2:
PF0043115=CUB=FE(34.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGCGGCCTTTTGAGT
R:
TTCTCCCCGTTGATCTCCACA
Band lengths:
207-1694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]