RnoINT0144318 @ rn6
Intron Retention
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7224280-7224624:-
Coord C1 exon
chr16:7224568-7224624
Coord A exon
chr16:7224479-7224567
Coord C2 exon
chr16:7224280-7224478
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCTAACTCCTTTTGATCCAGGGC
3' ss Score
6.82
Exon sequences
Seq C1 exon
AAGACTTGCAGCATCTGTGGACTGGAGCCACCCTGTCCTCGGGGCTCACGGGAGCAG
Seq A exon
GTAAGGGGCTGGAGGCTGAGCTGAGGGTTGGGGTAGAGGCGGGGCACATCAATCAAGCTCAGGTAGTGGCCTAACTCCTTTTGATCCAG
Seq C2 exon
GGCAGCCCTGAGGCCTGCTGGCGTCACTACTCCAAGTTCTGGGCAACTCCTCTGCACTCCATAACCATGCGTGGAGGTTCCTGGATAACGCCTAGTTTTTGGAACCGCAACCACATGGGTAGGGGTTGCCACCGCAAATGTGTCACCACCGTCTGGAAGCCTAGCTGTTGCCCTGGTCACTATGGCGCTGACTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434:ENSRNOT00000025394:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCAGCATCTGTGGACTG
R:
TGTGGTTGCGGTTCCAAAAAC
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]