HsaINT0160004 @ hg19
Intron Retention
Gene
ENSG00000010327 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:18628]
Coordinates
chr3:52554658-52555021:+
Coord C1 exon
chr3:52554658-52554714
Coord A exon
chr3:52554715-52554819
Coord C2 exon
chr3:52554820-52555021
Length
105 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
GCCTGACTCCTTTGGCCCAGGGC
3' ss Score
4.82
Exon sequences
Seq C1 exon
AACACCTGCAGCATCTGTGGGCTGGAGCCACCCTGTCCTGAGGGGTCACAGGAGCAG
Seq A exon
GTACAGGGCTAGGGGCTGAGTGGGGGTGGTGGGGTGGGGGCAGGCAGAGCCCAAGGACCACCAAACTCAGAACCACCCAACTGCGGCCTGACTCCTTTGGCCCAG
Seq C2 exon
GGCAGCCCTGAGGCCTGCTGGCGCTTCTACCCGAAGTTCTGGACGTCCCCTCCGCTGCACTCTTTGGGATTACGCAGCGTCTGGGTCCACCCCAGCCTTTGGGGTAGGCCCCAAGGCCTGGGCAGGGGCTGCCACCGCAATTGTGTCACCACCACCTGGAAGCCCAGCTGCTGCCCTGGTCACTATGGCAGTGAGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010327-STAB1:NM_015136:54
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCTGCAGCATCTGTGG
R:
CATAGTGACCAGGGCAGCAG
Band lengths:
244-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)