GgaINT0020618 @ galGal4
Intron Retention
Gene
ENSGALG00000001535 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:HGNC:18628]
Coordinates
chr12:631668-632042:+
Coord C1 exon
chr12:631668-631814
Coord A exon
chr12:631815-631976
Coord C2 exon
chr12:631977-632042
Length
162 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTTTCTTTCTCCCTCCACAGGGA
3' ss Score
12.86
Exon sequences
Seq C1 exon
GGAGAGCTTCTGGTGGGAAGTGGTGATGCTGTGATCATCCAGAGGCACATGGAATTCCATGGGGGCATTGCTTATGGCATAGACAGGCTGTTAGAGCCACCAGACCTGGGATCTCGCTGCGATGAGTTCATCTCTGTGGAGCTGAAG
Seq A exon
GTGAGCACTTGGGGTGATGCCGATGAGGATCCGTGCTGTCTGCTGAACCCTTGTCAGCAAGGAGGGGTGCTGGGAGCCCGCTGCTCCTCCTTGCAGAGCTCCCTGCAGCTGAGGAGCAGAACCCACGCTGAGTGGCTGTGGGGTTTCTTTCTCCCTCCACAG
Seq C2 exon
GGATCGATGGAGAGCTGTGGACCCTGTGGCTTCGAGCCGCCCTGCCCTGCTGGCTCAGTGCAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001535:ENSGALT00000002333:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(24.2=65.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGCTTCTGGTGGGAAGT
R:
GTTGCACTGAGCCAGCAGG
Band lengths:
211-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]