RnoINT0144317 @ rn6
Intron Retention
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7224568-7224877:-
Coord C1 exon
chr16:7224728-7224877
Coord A exon
chr16:7224625-7224727
Coord C2 exon
chr16:7224568-7224624
Length
103 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
TTGGCCTCCATCTCCCCCAGAAG
3' ss Score
7.84
Exon sequences
Seq C1 exon
GGCGAACTCATGGTAGGTGAGAACGAGGCCCGCATTGTGCAACGGTACTTGCTGTTTGAAGGGGGCCTGGCTTATGGCATCGACCAGCTGCTGGAGCCACCTGACCTTGGTGCCCGCTGTGATCGCTTTGAACCCCAGCCGCTTCAAACG
Seq A exon
GTGAGGAAGGCCTCAGGGCCAAAGGTGCACGGCAGGGGTCAGCCTACCTGTCCTGTCCTGCCCACCCACCTGACCTTGTAGTGTTGGCCTCCATCTCCCCCAG
Seq C2 exon
AAGACTTGCAGCATCTGTGGACTGGAGCCACCCTGTCCTCGGGGCTCACGGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434:ENSRNOT00000025394:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(24.2=64.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAACTCATGGTAGGTGAG
R:
GTGAGCCCCGAGGACAGG
Band lengths:
199-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]