BtaINT0141800 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014782 | STAB1
Description
Bos taurus stabilin 1 (STAB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001205570]
Coordinates
chr22:48887768-48888075:-
Coord C1 exon
chr22:48887926-48888075
Coord A exon
chr22:48887825-48887925
Coord C2 exon
chr22:48887768-48887824
Length
101 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
TTGCCTTCCTCTCCTTGCAGAAA
3' ss Score
13.07
Exon sequences
Seq C1 exon
GGCGCACTCACGGTGGGAGAGGATGCCGCCCGAATCGTGCAGCGACACCTGCCCTTTGAGGGGGGCCTGGCCTATGGCATTGACCAGCTGCTGGAGCCGCCTGGCCTTGGTGCCCGCTGTGACCGCTTCGAGACCCGACCGCTGTGGCTG
Seq A exon
GTGAGGGAGGCCACAGGCCAGACGCGGAGGGGGTGCCAAGGCCACTTGGCACTGTCCTGTCCACCCACTCGACTTGCCGTGTTGCCTTCCTCTCCTTGCAG
Seq C2 exon
AAAGTTTGCAGCATTTGTGGGCTGGAACCCCCCTGCCCTCCGGGCTCACAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014782:ENSBTAT00000019663:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(24.2=64.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCACGGTGGGAGAGGATG
R:
GGTTCCAGCCCACAAATGCT
Band lengths:
174-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]