HsaINT0160003 @ hg19
Intron Retention
Gene
ENSG00000010327 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:18628]
Coordinates
chr3:52554416-52554714:+
Coord C1 exon
chr3:52554416-52554565
Coord A exon
chr3:52554566-52554657
Coord C2 exon
chr3:52554658-52554714
Length
92 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
TTGGCCTCCCTCCCTTCCAGAAC
3' ss Score
10.65
Exon sequences
Seq C1 exon
GGTGAGCTCATGGTGGGTGAGGATGATGCTCGCATTGTGCAGCGGCACTTGCCCTTTGAGGGTGGCCTGGCCTATGGCATCGACCAGCTGCTGGAGCCACCTGGCCTTGGTGCTCGCTGTGACCACTTTGAGACCCGGCCCCTGCGACTG
Seq A exon
GTGAGGGAGGCCAGAGGCAGACGGGCAGAAGCCCACCCCGCCTGTGGTGTCCATCCACCTGACTTTGCTGTATTGGCCTCCCTCCCTTCCAG
Seq C2 exon
AACACCTGCAGCATCTGTGGGCTGGAGCCACCCTGTCCTGAGGGGTCACAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010327-STAB1:NM_015136:53
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(24.2=64.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCATGGTGGGTGAGGAT
R:
CCACAGATGCTGCAGGTGTT
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)