RnoINT0147562 @ rn6
Intron Retention
Gene
ENSRNOG00000030245 | Tango2
Description
transport and golgi organization 2 homolog [Source:RGD Symbol;Acc:1310348]
Coordinates
chr11:86829499-86831108:+
Coord C1 exon
chr11:86829499-86829618
Coord A exon
chr11:86829619-86830993
Coord C2 exon
chr11:86830994-86831108
Length
1375 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
GATGTGTGCACTGTCCACAGGTG
3' ss Score
9.93
Exon sequences
Seq C1 exon
GGCTCGACATGGAAGAAGGCAAGGCAGGAGGAACATGGCTGGGCATCAGCACACGCGGGAAGCTGGGGGCACTCACCAACTACCTACAGCCCCGGCAAGAGCCAGACGCCCGCGGCAGAG
Seq A exon
GTATGGGATCGCTGGGATCAGGTGGGACCTAGGTAGGGTAAAGCCAAGACACACTGGGGAGGAGCTAAGGCAGGGCTGGCAGAGTAATGGAAGTGCATAGGTACAACGGGGAAGGGGGAAGAAAGAAAGGCACCCTGCCAGGGTTTCTGCTGGTGGCCCCCCACACCCTCCATCCCTTTCACAACAGTGACAAGAAAAAGAGATGCCCAAGTATTGCCAATGTGATTATACCATTGTCCTTTATGGTTGTGACTCCCCGACCACATATCATTGTCCCCTGCCTGTTAAGTTTCAGCTTTCTTTTTATTTTCTTAAAGAGATTTATTTATGGGCTAGAGAGATAGCTCAGCGGTTAAGAACACTGACTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCACATGGTGGCCCACAACCATCTGTAATGGAATCCGATGCCCTCTTCTGGTGTGTCTGAGGATAGCCATGGTGTACTCACATAAAACAAATAAATAAATCTATAAAAAAAAAGAAATTTAGTCATGTATGTATGTATTTTATGTATATTAGTACATATATACCTGCATTCGAGGGTATTGGATCCCATTATAGACCTTTGTAAGCTGCCATAGGGGTACTTAGAATTGAACTCAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCCGACTACTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGAGATCCGATGCCTTCTTCTGGTGTATCTGAAGACAGCTACAGTGTACTTATATATAATAAATGAATAAATCTTAAAAAAAAAAAAGAATTGAACTCAGGACCTCTGGAAGAAGAACCACTGAGCCGTTTCTCTTTCCCCGAGTTTCATCTTTCTTAATGCTGTATTTCCACATGAAGGTAGAGTGGACAGACGTTATTTTCTTTCATTTATTGTTCATTCCACCATGTTGAGATTGAACACTGGATACCAAGCAGGCTAGACAAGGACTTTACTATTGAGATCTGCCTCTCACGTACATGTTTTCTTTCCCTCTAGACAGGGTTTCTCTGTATAGCCTTGGCTGTCCTGGGACTTCCTGTGTAGACCAGGCTGGCCTCAATTCAGAGATCCACCTGCCTCTACCTCCCAAGTTGTGAGATCAGAGGCATGCACCACCCCCCACCCCAGGCCTAGAAAGTATTTTTAAAACCATTCTCCATAATCAGTTATCAAAGTATGGCTGACTGCAGATGTTGGAGTCCCAGTGAAACCCCTCCTCCTATATCCTCCTCCCCAGAGGCCCTACTTCAGTCTTCCCTGAGGCAGGAATTTCTGTGTGCTGTCTTGGCCATTGATGTGTGCACTGTCCACAG
Seq C2 exon
GTGAACTTGTGTCTCACTTTCTGACCAGTGACATGGACAGCCTGTCCTACCTGAAGAAGGTCTCTACAGAGGGGCACCTATACAACGGCTTTAACCTCATAGCAGCTGACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030245:ENSRNOT00000046594:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(14.7=100)
A:
NA
C2:
PF057427=NRDE=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGACATGGAAGAAGGCAA
R:
CTTAGGTCAGCTGCTATGAGGT
Band lengths:
234-1609
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]