BtaINT0145042 @ bosTau6
Intron Retention
Gene
ENSBTAG00000045910 | TANGO2
Description
Transport and Golgi organization protein 2 homolog [Source:UniProtKB/TrEMBL;Acc:F6Q0Y7]
Coordinates
chr17:74975254-74975838:+
Coord C1 exon
chr17:74975254-74975373
Coord A exon
chr17:74975374-74975723
Coord C2 exon
chr17:74975724-74975838
Length
350 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
GCGTGTGTCCCCTGCCACAGGTG
3' ss Score
9.13
Exon sequences
Seq C1 exon
GGCTGGACATGGAGGAAGGCAAGGAGGGCGGCACGTGGCTGGGCATCAGCACGCGGGGCAAGCTGGCCGCGCTCACCAACTACTTGCAGCCGCGGCTGAACCGCAATGCCCGGGGCCGAG
Seq A exon
GTACAGGGCTGGGGGCTCGCAGACGTCTGCAGGGGTGGGAGGCGGGGCGAGGAGAGGGGCCCTGCAGCCCCCTGGCTGGTGAAACCGGGAGCCACCTCGGCCAGGCCACAGCCTGGCTCCCGACCACTGTGTGGTCACCCCCGTCCTGTGCACACACGCTGTCTCCGACGTCCCCTTGCGCTGGACCTCCCCGTGGGGGCTCAGCAGGGGATGTTCAGAGTCAGAAGCCTCCACACCCACCTCCTAGGCTGCCGGTCAGCAAGGGAGGCGCAGGCCCGGGGGGACTGTTGTCTCCCGGGAGACAGGCTCAGTCCTGCCGCCCTTCCATGGGCGTGTGTCCCCTGCCACAG
Seq C2 exon
GTGAGCTCGTGGCCCAGTTCCTGACCTCGGACATGGACAGCTTGTCCTACCTAAAGAAGGTCTCGGCCGAGGGCCATCTGTACAACGGCTTCAACCTCATCGCGGCCGACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045910:ENSBTAT00000016497:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(26.5=100)
A:
NA
C2:
PF057427=NRDE=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGACATGGAGGAAGGC
R:
GTCGGCCGCGATGAGGTT
Band lengths:
230-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development