RnoINT0147564 @ rn6
Intron Retention
Gene
ENSRNOG00000030245 | Tango2
Description
transport and golgi organization 2 homolog [Source:RGD Symbol;Acc:1310348]
Coordinates
chr11:86834018-86837730:+
Coord C1 exon
chr11:86834018-86834088
Coord A exon
chr11:86834089-86837576
Coord C2 exon
chr11:86837577-86837730
Length
3488 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGCTGACCTTCTCCCTATAGGAA
3' ss Score
10.44
Exon sequences
Seq C1 exon
CACAGCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCTGAGCCTATTGTCTTGACACCAG
Seq A exon
GTGAGCCTGCTTTGGTGTCTAGACAGGGTAGGGACTGCTCCTATGTTGGAAATACTATGTGGTAAGAGCAAGACCCCTGGGAAACAGCATTATTGGGGTCCAGCACAGCATCGTAAACTAACCTGGGGCCAGCTGCTTTCTCTGTTCACAGCCTATGGACAGTCCTTGCTGGTAACATCTTGGGTCTGTGGGCCTTGGATATTGACTTGGGTGCCTACAACTGAGCTATTGGCTCATATCATTTCAAGACTGGGGATGTTTGAGTCCCAGGCGGGCCAAGGGGCTCCAGACCCCTCCCCATTTGCTGGGTTATGTCCAGGCCAGGATGGGATGGGCTGTTGAGATCCTAGAACCAGCAGCCCACACCAAAGCATGGGTTTTAGTCCATCCCACTTAGCTCTCCTACGCACCTCACAAGGGGCTCTCTGCCAGCTGTGGGCACTCTGCCTATAGTACCCTCAGTGCCCTTGGTGCTGTATGTGCTTCCTGTCTTGTGCAAGCCCCAGAACAGGTCCAGTAGCACCCCTAAGAGCAAGCTGGTGCCTTGAAGTCCTGAGTGTAGGCAGTCGTTTGGGTTCATCTTTAACCAGGTCCTTGCCACTCTGTTTGCCTCAGAGACCTTTTTTTCCCCAGTGGCCCAGAGGCCTCTGGGAGAGCAGCTGGAAGCTGGGACAGGAGGCCCGCTGTTCTCAGAGCAGGAGACTCCCCGACACGAGCTTATTTTCTAGTAGAATTTCTTTCCCACCTGCATCATGATTTACTCCTGAGCTTACCCGACTTGATCTTTATCCACTTCCCTTTTTCTAATGTTGAGAAGTGAACCTACGCTCTTACACCCACTAATACACTCCTAGTAAACACTCAGACCTCTGCTTTTTTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCAGACCTCTGCTTTTAAGCAGGCCAGTTGCTCTGAATTCAAATTCAGCACCAACTACATAGTGAATGCCAAGCCAGCCTGTGTTACAGAACGACGCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAACAAACCATAACTGAAACATGACTCTTACACGCTGTGCGTGTAAAGTCTGTCACACGTCAGCTATGGTGACACAAGCCTATAACCCCAGCACTAGATAAGCTGGGAGTGGTGGTATTCGGGAGGCTGAGGCAGAGGGATCACAGAGGTCAGAATGGACTCCCTTAATATTCAAACGTGACCTTTAAATCTCAGCACTCAGGGAAGCAGAGGCAGGTGATCCTCTATGAATTCCAGGCCAACCTGGTTTATACATTTGAGTTTCAGGCCAGCAAATGTTACATACTGAGACTCTAACTCAATAAACCAAATACATTAGTAAAATGAAGAACTGATGTGAGTAGGGCATGTTGTGCACATCTTTAATCCCAGCACTCGGGCAGAGGCAGGCGGATCTGTGAGTTAGAGGCCAGTGTGTTCTACATAGGGAGCTCTAGGTAATTCCAATTTTTCTCAACGTCTGCCCCAAACCCCCAGACCCATGTGCACCTGCTCCTGCTCATCTCCTGTCCAGTGGGGTTTATGCGTTCTGGTCATTATCATTTGGGTGGAGGATGCTGACCTCTGTAACTTGACTCACTTATCTTTTTTTTTTTTAATATTTGTTTTATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTTGGCTCACTTACCTTGATGTTTTAAAGTGCCTTTACCCCAGAGCCATCTCACTGGCCCATACATCTCAATCCATTCAGGGCTTTCGAGGAACTCCCACGTGGTTTGTCAGAGCATCTGCACCATTCTACCCTTGTGCCAACAGTTTGCAAAAATCCCTGTCTCCTGAGCTCCCACCAAGACTTGCTGGTCTCTCTCTTTAGGGAGAGGGCTGTAGAGATGAGACCCAGGCCTTTTAACATGCCGAGCACATAATATACTATATGTATTTACTGAGCCACCTCCCCAGCCTGAGGTACTGGTTAGTGCTCGCCACCTTTGACGTCATTACCGCCACCTCCCCTTCTTATGGGGAGGGGTTAGAGGTTCCTGTATCTCAGGCTAGACAGACTCAAACTCGGTATATCCACAGATGGCATTGAGCTCCTGACTCCACTGCCTCCTTCTGAATGCTGGAGTTACAGGTGTGGTCTGTCCATCTGTTTTGTTCTCTTTTAGTCTTGTAAAAGTTCTCTCTATAACCTACAAGTCTCATCAGATATCTAACTTGCAGAAATCCTCTCTCATTTTATGTTTTATTTAACGTTTTGGCACATTTCTTTTAAAAGATTTGTTTATCCATTTCGTGTGTGTGAGTACACCATTGCTGTCTTCAGACACACCAGAAGGGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGAGGTTGCTGGGAACTGAACTCAGGACCCCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCTGTCTCTCCAGCCCAGGCACGTTTTTTTAAATGCATAACTTTAAATTTATAAGCGGTCCCACTTATCTTGTTGATATGCTGTGATGTCTTGCCTAATAAATCACTGCTCACTGGGTTGTGAGGCTTTTTCTTTTAAAAATGTTATTTACTGTGTGTGTGCATGTGCATGTGCATGTGCATGTGCTAGCACGTGTGCTCACTTTGGGACACAGTCTCACTCTAGCCCAGGCTGACCTGAGTCTTGCTATGTAGGCTGACTCAAACCTGCCAAATCTTGCCTCAACCTCCTGAGTTCTGGGATTATAGATACATGCCACCCCCTTTGGTCCAAAAGGGGGTTTTGGAGATAGAATTCATGTAAACAAACTTGCCTCAAATGTTTCTTTGTCGTGCATTTGTGTGTGCACGTACATGCCTGTGTGCCCATGCCTCAGTGTGCATGTGGAGGTCAGAGGACAAACTTGCAGGAGTCAGTTCTCTCCTCCTACCAAGTAGATCCCAGAGCTTGAACTCAGGTCATCAGGCTTGGTGGCAGGTGCCTGTATTCACTGAGAGCCCATCTTGCTGACCTTGAGGTAATTTTCGCATTGGGTGTGAGGTCAAGTCCGACTCCATTCTTTGTGAATCACCAGCTCCATTATGGAGTGGTCTGCCAAACTAGTCCAGAAGGAAAAAGCAGTGCCATTAGGGTTGACCGAGTCTCCTTGGGGGGCTCCAGCAGAGCCAGAGTGATGATCTAGGTTCTCAGCCGGAATTCTCAATCAGAATTGGCTTCTACTGGTACCTTGTTTGGGATGCTTGACTGTAAGCCATCTGCCCCAGCCACCTGTGGCCTCTGCATGGCCAGGCTGACCTTCTCCCTATAG
Seq C2 exon
GAACCTATGGGCTAAGCAATGCCCTGCTGGAGACGCCCTGGAAGAAGCTGTGCTTTGGCAAGCAACTCTTCACGGAAGCAGTGGAGCGGAGCGAGTCACTCCCTAAGGACATTCTTGTCACCCAGCTCCTAGAAGTCCTCAACAATGAGGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030245:ENSRNOT00000046594:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(8.8=100)
A:
NA
C2:
PF057427=NRDE=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]