RnoEX0088563 @ rn6
Exon Skipping
Gene
ENSRNOG00000030245 | Tango2
Description
transport and golgi organization 2 homolog [Source:RGD Symbol;Acc:1310348]
Coordinates
chr11:86834018-86840555:+
Coord C1 exon
chr11:86834018-86834088
Coord A exon
chr11:86839187-86839291
Coord C2 exon
chr11:86839826-86840555
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGGTCCTCTGTTCTTCTAGACA
3' ss Score
9.14
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
CACAGCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCTGAGCCTATTGTCTTGACACCAG
Seq A exon
ACAGCTGCCAGACCCAGCCATTGAGGACCAGGGCCAGGAGTATATTCAGCCAATACTGAGCAAGTATGCAGCTGTGTGTGTCCGCTCTGCCACCTATGGCACCAG
Seq C2 exon
AACCAACACCATCATCCTTGTGGATGCAGATGGCCATGTGACCTTCACAGAACGAAGCATGCTGGACAAAGACACCTCCTGCTGGGAGACCAACACCTATGAGTTCACACTACAGAGTTAGTCACTGCCAGGCTCCTAAGGGCCAGCATGGACAGGAACCTTTGGTGGCCACCCTGCATGTCTGGCTCAGCCAGCATCCCTAGGACCAGGTCCTTCTGATCTGTGTCCTCGTATTCAGCTCAGGGTTTGTCTTTGTACCAATGGAGAATGGCAGAGTCAAATACTAGGTCTGAGTTGGGCCTAGGTGTATCCTATGTGAACACACGTACCTTGGTCAGCCCCACCACTACTGTGTACACAGACACGTGCACCTTACTGATGAGCAGGGTTATGCCTCTCACCTCACATGTTTGGCAAGTGGGTCTCTTCTTCCCTGGACAGGTAACAAAAGCAGACTTTTTTTTTTTTTTTAGAAACTGGAGACCCTGTATTTGTTTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030245_MULTIEX1-2/3=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(8.8=100)
A:
PF057427=NRDE=FE(12.9=100)
C2:
PF057427=NRDE=PD(12.9=85.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCCTGAGCCTATTGTCT
R:
GACCTGGTCCTAGGGATGCTG
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]