RnoINT0147565 @ rn6
Intron Retention
Gene
ENSRNOG00000030245 | Tango2
Description
transport and golgi organization 2 homolog [Source:RGD Symbol;Acc:1310348]
Coordinates
chr11:86837577-86839291:+
Coord C1 exon
chr11:86837577-86837730
Coord A exon
chr11:86837731-86839186
Coord C2 exon
chr11:86839187-86839291
Length
1456 bp
Sequences
Splice sites
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
3' ss Seq
CTGGTCCTCTGTTCTTCTAGACA
3' ss Score
9.14
Exon sequences
Seq C1 exon
GAACCTATGGGCTAAGCAATGCCCTGCTGGAGACGCCCTGGAAGAAGCTGTGCTTTGGCAAGCAACTCTTCACGGAAGCAGTGGAGCGGAGCGAGTCACTCCCTAAGGACATTCTTGTCACCCAGCTCCTAGAAGTCCTCAACAATGAGGAGGC
Seq A exon
GTAAGTGAGCAAGTCCCTCTGGGGCAGCCAGACTGGTTTAGAGCAGGGAAGAAGGCAGGCTCTGCTACCTTCAAGGTCTGTGACAGCAAGCAGGATAGCTCGTCAAGTGTAGGAAAATGCCCTACCTGACACGTTTCTCCACCTCCAAAGGACTCAAGCCTGTCCCTCTTGGGGAAGCAGTCAGGGTTTCTGGTGGGGCCCTGGATAATAAGAGATGGTAAAGCCAGGGGCCTGTGCTCTGGGAGACTTGGTGATCTCTGAGGTCTGGCGTCCCTCTTTTTTTTTTTTTTTTTTTTTAAGATTTATTCATTTATTATATATAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGCATCGGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCGGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTCTGGCCTCCCTCTTTACAAGGAGGGCCAGTGTTATATTCTAGAAGGTTCTAGCTGCTCAGCAAATCTTAGGTAGAAGAGCCAGAGGATCCAGAAGCCAGTCAGAATAAGCCTAGGGTTTGACATTGTTTGCTGTGCCCTGTCTTCAGCGACCTTGAAGCTAAGTGATAGGCAGACATACCTGTCCCTCGAAGGAAGAGACCCTCCCCCACCCCACCCCAACCCCAACCCCACCCCCTCTTTTATGCCCATGGCCTTCTTCATGGGGTACCCTCAGACTCTCCCCTTGGGCCTTAGCCATTGGAGCCAAGAGTCCTGGTGTCTCCCGTGCCAGTGTTTATCCCTTCACAGCCCCATGCATCTTCCCGTTCTCATCTAAGCCTGGTCACTCTCTGCCCAGATGACCCAGTGTCCCTCCATCTTGCTCACCTTGCAGTCTCTCAGCAGCCCCGCCCCCCACCATGCTGCCATCCTCCACAAGGTGAAGACTGCCTTCACCCCTGTGCACGCCCACCTCCCCCATACTATGGACCTTGAACCATAGCATTGTTCCCCAGCCTCAGCATCAGATTTCTTCTTGGAGGGCCTCAGCCATGTGCCCCCATCGTCCTCAATCACGTGAGCAGGCCTGTTATGTCTCTGGCTTTTCTTATCGATAGCTATAGTCATGGTATAAGTTGTGCTGGTTGGTGAGCCTCAGGCTTTCAGGGGGCTCTTGTGTGTGGAGAGATGCCCACAGGACACGATTAAGACACAATAGAGAGTGTATGTGCCATCTGGATGCCTAGGCTCAGTGTTGGAGTAGAAGGGTGACAGAGTAGGAGGAGCCAAGTAGACAAGTTATAAATCAACCTATGGTTCCTCCCCCCGTAGGTCTCCTCAGGAATCTCAGGCAGCTAGCATGGCATATAGGAGTCCCCATATACACAAGCTACAGACAGGCAGTAGGGACTCATAGTTTCTCTGGTCCTCTGTTCTTCTAG
Seq C2 exon
ACAGCTGCCAGACCCAGCCATTGAGGACCAGGGCCAGGAGTATATTCAGCCAATACTGAGCAAGTATGCAGCTGTGTGTGTCCGCTCTGCCACCTATGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030245:ENSRNOT00000046594:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(18.8=100)
A:
NA
C2:
PF057427=NRDE=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATGGGCTAAGCAATGCCC
R:
CATAGGTGGCAGAGCGGACA
Band lengths:
249-1705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]