BtaINT0145038 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012421 | TANGO2
Description
Bos taurus transport and golgi organization 2 homolog (Drosophila) (TANGO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035328]
Coordinates
chr17:74982798-74983349:-
Coord C1 exon
chr17:74983195-74983349
Coord A exon
chr17:74982903-74983194
Coord C2 exon
chr17:74982798-74982902
Length
292 bp
Sequences
Splice sites
5' ss Seq
GGCGTGAGT
5' ss Score
7
3' ss Seq
ACGCCGCCTCTGTCCTTCAGGCA
3' ss Score
8.85
Exon sequences
Seq C1 exon
GGGACCTATGGGCTGAGCAACGCGCTGTTGGAGACGCCCTGGAGGAAGCTGTGCTTCGGGAAGCAGCTCTTCCTGGAGGCCGTGGAGCGGGGCCGGGAGCTCCCCAGGGATGCGCTGGTGGCCCAGCTCCTAGCTGTGCTCAGCAATGACGAGGC
Seq A exon
GTGAGTGCCCCCTGCACACACACGGAGGCTCTGCGAGCCGGTCGCTTCCATCTGTGGGGCCTGCGTGGTCGAGCCCCGGGCAGCCCTGGGGGCCCTGACACAGGGACAGGCTGGCAGTCGCTGTCCCGTGGCCCCCACAGCGGAGCCCCTAGTAGCAGGTTGAGTAGGGGTTCTGGGCCCTGACCTGGGACGTGCAGGGAGCAGCTTGTGTGGTTCCCCCACCCAGTCTGGTGGACTCCCGGGCACTGCAGGGCTGCGAGCTGGCAGCAAGAACGCCGCCTCTGTCCTTCAG
Seq C2 exon
GCAGCTGCCAGACCCAGCCATCGAGGCCCAGGGCAGGGAGTACGTGCGACCCATCCTCAGCAAGTACGCGGCTGTGTGCGTGCGCTGCCCGGACTACGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012421:ENSBTAT00000016486:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.306
Domain overlap (PFAM):
C1:
PF057427=NRDE=PU(41.8=98.1)
A:
NA
C2:
PF057427=NRDE=FE(28.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTATGGGCTGAGCAAC
R:
CAGCCGCGTACTTGCTGAG
Band lengths:
228-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development