DreINT0160187 @ danRer10
Intron Retention
Gene
ENSDARG00000056550 | tango2
Description
transport and golgi organization 2 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040808-42]
Coordinates
chr5:26117790-26120911:+
Coord C1 exon
chr5:26117790-26117937
Coord A exon
chr5:26117938-26120806
Coord C2 exon
chr5:26120807-26120911
Length
2869 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
CTCACCTTTGTTTCCTCCAGAAA
3' ss Score
10.61
Exon sequences
Seq C1 exon
GAATCTATGGGTTGAGTAACTCTCTTTTGGAAACTCCGTGGAGGAAACTGCAGCACGGCAAACAGCTGTTCAGCAGTGTAGTGAGCAAAACGCTGCCCCCCGATGGCTTAGTGCAGGAGCTGCTCCACATCCTCAATAACGAGGAGCT
Seq A exon
GTAAGTGTGCACGATCCTTCATTATGAAAATGACGAGTCTCTTTACTTTATCTTTTCTGTTTCCTCTTCATCTTCCATCTACCTTTATCTTGCTTAAACAATTGAACCGCCATCCACCCTTTTTGATCCTGAAGATGCGCTTCAGATAAAAAGCAAATACATTATCAGAAAGTAACTTCTTAGACTCTTTGAAGTTCAAGCAGTATGATTTTTAAGCCTTTTTTTCCTCAAGTCTTATGAGATGAATGCTGGTAGCGTATAGTGAATTTAGATGTTTTAAAAAAATGCTCTTCAGAGAACTATACTGAATGACTTGAAAGCCTTCCGTGATAAGCATTGTTGTTTCTATTGCATGCTTTTTATTTTATAAAAAAATAAGTATCAGAGACAAACTGACCCATGTCAGAAATTTAGAATTCTTAGTTGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGTATCACATGAGTAGCAGTGTGATATGGCTGTATATCAGCACTGGTGGTAGGCATGCGATGACTCAAGGCCGCAGGCTAAGTGCCTAACCATGCATTCAAACGGGGCTTCAGCGTCGACGAATGACTGAGGGCGTGTCTGAAGTTGGGGCTGATGCAATCGTCATAGCTGCGTCAGCCAATGAAATTAGTCTGCAATCAGCTACTGTATGAGCTGGGGTATTTGCAAAAAGAAATCTGATTGGCTGATGCTTCCGTTGACACTTGAAAAGTTGAGAAATCCCCAACTTCTGCAGCGAGCAACGCTGCTAAAGTGCCACCGACAGACCCACTATTCAGTTCAGCAATACTTGGTGTCACCCATTCAAAGTTAATGGGTTAACTTTGTTAATTTCATTAGTGCCCCCCACCAGTGCCGATATACAGCCATATCGCATTGCTACGAGTGTAATATTGCATTTATACAACAGTTCGACAGCATAATCGTGTGTATAAAAAAGAAAACCAAACACAGAGTCTCAAAAACCCTTTTGTATGAGGAACTACTTCCGCCATTCATTCACTTCTGCAGCTGACCGTCAGACCAGCAGAAACTGTTGCTAATTCACCAACATCACTTTAGAGCTAGTGTTTGAATGATTCTCTTGCGTAATGTCTTAAGTGAAGAGCAAAACAGTTGATTTTGCTGACATTTTAAGATTATAAGGCTAAACGGCATGAAATGCCATAAATCTACAGAGATTTGCCAGTATTTCTCTGTTGCAATCGGGAAATCACAATAATTAACCATGAAAAAGCGAAAGCAAAGCAAACACTACCAGTTTCTGTGTTATAAACACAGCACTACAAAATACTAAAGAGAGAGATCAACTTAGAATGTCACTTACCAGATTTATAATGATTTGTTCAGCTGTAGTTTGAAACTTGAATCTCCCTCTAAAGACTTATTATGCAGTCTCTGTCGCCATCTTGTGACAGAACGTCAACAGTCACTTTCTTTGGTCTGCTCAGACAGGCTGATGGTCGCCAATGCAATGAATCTTCAAAATTATAGATATTTTTAAATGGACACTATCCTTATAAATAAACTGCATAGTTGCAATCTAAACAATTACATTCTTGACTAAGTGTTATGTAAAAACAGAGATATAGATGATCAGATAATTCTGTTTTTACTTTTCAATTTAGCCAGCTATAGAGAAACTGCTAGCCAAGCAAAAGATTGGTGACGCCACACACACACACACACACACTCCCAGCACAACTCAACACAGTTGTCTAGTGGTGCCTAAAATTCCAGACCATAAACCTTTCGGCTCAATAGTGGAAAAGCGGCTTTTGTTTTTCACCAAATCATTGGAGCTCTGGTGACTATAAACAGCATATATACAATGTTATACCATGTATACACACAAATGTCCAGAAAAGTAGACAATACCAGTACAATACTGACCTCATAAATGCCTCATAAATCAACTAGAATGAAGTATTTAGAAAATGTAGGTTTTAGTGATGGTCGATCTTGAATGATTCATTCATTTTGAACGAATCTTTTGTATGACTCGAACGATGAGTCCTTTCAGGGATTGATTCGTTCATTCGTGCATGCGCAAATTTGTGCTGGTGGAGTAGAAGGTTGGTTCCTTTTTGGAGTCTTCTAGCAGGTTTGAGTTGTTTACTCATCATGACAAAAGCCAGTCATATGCATTAAAAGCCAGAAAAAGATTTGATCCGTTCATTTCTCGAGTCCTCAGGTTTGAGTCATTTCTCTTTACATGCTGTCACATGATTAACCAATGATTCAAAAACCAGAAGACTCTAAAAGTTAACTAAACATGGCTCCTTTTAGTTCTGACTGTACACGTGCATTGGTTAAGCTTACTGTCTGTGTGACGTGAACAAACTACTCTTATTTGAAGACCTGTCTGAAGAGGTGAGCTGACATAATCATTGACAAAAGACCCGGTAAACAAAAAATAATTATTTTCTCTTTCTTACAGCATTTTAGTTATGACTTGTTTGTAGTGTGATCAACGTTTGGTGTAGTTGTAGATGAGCTTGGAAGCAAATCGTAACATTTTAGTGATATTTTGACAAATTTAATGAAATGACTCAAAAAGATTTGTTCATCTCATGAACTAGACTCAAAGGCCTGAGTCCGTAAAATGATCCAAACTTCCCATCACTAGTAGGTTTGGAATAAGGGGACAGAATATAAAGTCTACAGTATAACAATCATCACATCTATAGGAAATCCATCTTAAATCATAAAAACCCTCATGTATGTATATCTCACCTTTGTTTCCTCCAG
Seq C2 exon
AAACACCCCAGACCCTGCACAAGAGAGTCAAGGTGTAGGCTACAGTAATGCCATGCTAAGAGCGCTGTCTGCAGTGTGTGTTCGCTCACCGGGATACGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056550:ENSDART00000079064:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(18.2=100)
A:
NA
C2:
PF057427=NRDE=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]