GgaINT0007914 @ galGal4
Intron Retention
Gene
ENSGALG00000002056 | C15H22ORF25
Description
chromosome 15 open reading frame, human C22orf25 [Source:RefSeq peptide;Acc:NP_001007837]
Coordinates
chr15:1268452-1268817:+
Coord C1 exon
chr15:1268452-1268605
Coord A exon
chr15:1268606-1268712
Coord C2 exon
chr15:1268713-1268817
Length
107 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGA
5' ss Score
5.75
3' ss Seq
TTCTTCTACAACTTTTTCAGTCA
3' ss Score
5.91
Exon sequences
Seq C1 exon
GAATATATGGACTGAGTAATTGTTTGTTGGATACACCATGGAAGAAACTTCAGTATGGGAAACAGCTTTTCACAGAAGTCATCAACAGAAGTCAAGACCTTGCCAAAGAAGACTTGGTGCAGGAGCTCCTTACAGTGATGAATAATCAAGAGCC
Seq A exon
GTAAGAAAACAGTATTGAGAGGCCAACTGCACAGAAAGCAGCTTTAGTGCAGGAGATAATATGATGAAGAATTAAAATAATAATAATTTCTTCTACAACTTTTTCAG
Seq C2 exon
TCAGTTACCTGACCCTGCAATTGAAGACCAAGGGAAGGAATACATACGTCCTATATTGAACAAGTATGCAGCTGTGTGTGTTCGTTGCCCGGGTTATGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002056:ENSGALT00000003199:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.222
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(18.8=100)
A:
NA
C2:
PF057427=NRDE=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTGAGTAATTGTTTGTTGGA
R:
CTTGTTCCATAACCCGGGCAA
Band lengths:
252-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]