RnoEX0088564 @ rn6
Exon Skipping
Gene
ENSRNOG00000030245 | Tango2
Description
transport and golgi organization 2 homolog [Source:RGD Symbol;Acc:1310348]
Coordinates
chr11:86839187-86840573:+
Coord C1 exon
chr11:86839187-86839291
Coord A exon
chr11:86839826-86839941
Coord C2 exon
chr11:86840299-86840573
Length
116 bp
Sequences
Splice sites
3' ss Seq
TAAAGGATGCTTTCTTTCAGAAC
3' ss Score
5.66
5' ss Seq
AGAGTTAGT
5' ss Score
0.9
Exon sequences
Seq C1 exon
ACAGCTGCCAGACCCAGCCATTGAGGACCAGGGCCAGGAGTATATTCAGCCAATACTGAGCAAGTATGCAGCTGTGTGTGTCCGCTCTGCCACCTATGGCACCAG
Seq A exon
AACCAACACCATCATCCTTGTGGATGCAGATGGCCATGTGACCTTCACAGAACGAAGCATGCTGGACAAAGACACCTCCTGCTGGGAGACCAACACCTATGAGTTCACACTACAGA
Seq C2 exon
AAACTGGAGACCCTGTATTTGTTTGCGTTCAGTAGTTCCGTATGCACAAGGACTCTGTGTGCATTTGCTCAATGCTGAGGTGTGGAACCTGGGATCTCTTAGGCCCCTGCTTGCCCAGGACTGTGGGTTCTGAGCAAGACCATTTCACCAAATGGCTCACGCAGCCCCTGCCGTCTCTCACTGTCCGTGTTATAAGCTGTACACCATGGGATGTGAACTCGAATGTGCACAGTTGATAATAAAACTTTGAGGCTGGAATGAGTGTTGGCTTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030245_MULTIEX1-3/3=2-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(12.9=100)
A:
PF057427=NRDE=PD(12.9=85.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGCAGCTGTGTGTGTCC
R:
CACATCCCATGGTGTACAGCT
Band lengths:
258-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]