RnoINT0147566 @ rn6
Intron Retention
Gene
ENSRNOG00000030245 | Tango2
Description
transport and golgi organization 2 homolog [Source:RGD Symbol;Acc:1310348]
Coordinates
chr11:86839187-86840555:+
Coord C1 exon
chr11:86839187-86839291
Coord A exon
chr11:86839292-86839825
Coord C2 exon
chr11:86839826-86840555
Length
534 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATC
5' ss Score
4.28
3' ss Seq
TAAAGGATGCTTTCTTTCAGAAC
3' ss Score
5.66
Exon sequences
Seq C1 exon
ACAGCTGCCAGACCCAGCCATTGAGGACCAGGGCCAGGAGTATATTCAGCCAATACTGAGCAAGTATGCAGCTGTGTGTGTCCGCTCTGCCACCTATGGCACCAG
Seq A exon
GTGATCAGGGTTGGGACTCCCGGGCACATTCCCTTCCCTTTGGTATTCCCTACCACACAGCTGGCCACGGCAAGGCACCGCCGCTCATTCAGTGCATTTCAGAGTCTCTCTTCAGACTTAACTGTAGGTTGATCAGATCCTATAGGTAAGGTGCCCATGCATAAGTCAGGTGGGTCAGAGCTCTGGCCTCCCGAAGCTGCCATTGTGTTCTAGGTGGGGTTTCTGGCTGCCCCACCTGTTCAAGGAAGCAAGAGATGGCATTTGGAATGTTTCTGCTGACAGATAATCGGTTGGCAGATGCCCTGGCACTGCTTTTTCAAAGCTGTGGTTTACATGCTGGATGGCAGCTATGAGCTGATCTTTTCCTGTGTGCCCACCCTTCTGAAGGGCAGGAGCTCACACATAAGACCCCACCTGATGCCAAAGCTGAGAGGCTAGCTCAGGCCCTGGCTGTGAGCACCCTTCCTGCCTCATGTCCTGTCCCAGCCATGGCTCTGCAAAGTGGGGCTGGGGCTAAAGGATGCTTTCTTTCAG
Seq C2 exon
AACCAACACCATCATCCTTGTGGATGCAGATGGCCATGTGACCTTCACAGAACGAAGCATGCTGGACAAAGACACCTCCTGCTGGGAGACCAACACCTATGAGTTCACACTACAGAGTTAGTCACTGCCAGGCTCCTAAGGGCCAGCATGGACAGGAACCTTTGGTGGCCACCCTGCATGTCTGGCTCAGCCAGCATCCCTAGGACCAGGTCCTTCTGATCTGTGTCCTCGTATTCAGCTCAGGGTTTGTCTTTGTACCAATGGAGAATGGCAGAGTCAAATACTAGGTCTGAGTTGGGCCTAGGTGTATCCTATGTGAACACACGTACCTTGGTCAGCCCCACCACTACTGTGTACACAGACACGTGCACCTTACTGATGAGCAGGGTTATGCCTCTCACCTCACATGTTTGGCAAGTGGGTCTCTTCTTCCCTGGACAGGTAACAAAAGCAGACTTTTTTTTTTTTTTTAGAAACTGGAGACCCTGTATTTGTTTGCGTTCAGTAGTTCCGTATGCACAAGGACTCTGTGTGCATTTGCTCAATGCTGAGGTGTGGAACCTGGGATCTCTTAGGCCCCTGCTTGCCCAGGACTGTGGGTTCTGAGCAAGACCATTTCACCAAATGGCTCACGCAGCCCCTGCCGTCTCTCACTGTCCGTGTTATAAGCTGTACACCATGGGATGTGAACTCGAATGTGCACAGTTGATAATAAAACTTTGAGGCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030245:ENSRNOT00000046594:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(12.9=100)
A:
NA
C2:
PF057427=NRDE=PD(12.9=85.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGCAGCTGTGTGTGTCC
R:
ACACCTAGGCCCAACTCAGAC
Band lengths:
351-885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]