HsaINT0023206 @ hg19
Intron Retention
Gene
ENSG00000183597 | C22orf25
Description
chromosome 22 open reading frame 25 [Source:HGNC Symbol;Acc:25439]
Coordinates
chr22:20050861-20053447:+
Coord C1 exon
chr22:20050861-20050965
Coord A exon
chr22:20050966-20052064
Coord C2 exon
chr22:20052065-20053447
Length
1099 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
GGGCCCCTGCTCTCTTTCAGAAC
3' ss Score
9.19
Exon sequences
Seq C1 exon
GCAGCTGCCAGACCCGGCCATCGAGGACCAGGGTGGGGAGTACGTGCAGCCCATGCTGAGCAAGTACGCGGCTGTGTGCGTGCGCTGCCCTGGCTACGGCACCAG
Seq A exon
GTATTGCAGCACCGTGGGTGCGCCACCTCCTATCCCATGTCCCACCTCCCACGCTAGAGGGCCGGCAAAGAAGCCAAGTGCCCATAGCCAGAGCCAGGCTTCTTCCTCGCCTGAGTGGATTCCAGAGCTTCTGCCCTGTCCAGACGCAGCTGCAGGGTGAGCAGATACCACAGGCTCCCGGGGCCCCACAGGCTGGGCTTAAGGAGCCAGTACACAGCCACACAGGGCCAGGATGGCTTCAGGGCTGCCTGCACATTGGTGGATCCCTGCGGGCAAACGCCCCGGCACCATGGCACTAGGCCTGCAGGCTGTACCCTTGGGTGGTGGCTGCTGGCCAGCCTTTCCTGCCTGGGGCTGGCTGGCCCATTGGCAGGTGCAGGGTGTCATTTCCTTCAGCCCCTCCTCTGTCATAGGCTCATCTTCCTGTGTGTGAGGGGAAGGCAAGTGCCAACTCCACTCCCTGGCAGGCCGCATAGCCGCTGGGTCCCACCCCACGGGGTGCACTGCGTATGTGTCTGCCCTGGGAACCAGCCTGTGCTGGGGCTGTTGGGGGATCCAGGGCCACCCTCCGTCTGCAAAGCCCACGGCAGAGAGGGTTGGAGGAGAGGAGAGTGTGCTGAATGTTTGCTTCAGGTGGGCTGGCATGGCCTGGGCAGTGGAAGAGAGGGCACAGGAGGGAAGCCTTCCAGACAGAGGAGGCCTGGGCCCCAAGTGGTCAACAGCTTGACCTCTTGGAAGAACCAAGCATGGCTGTGTCTGGGAACCTGGGCCTCCAAAGGGGAAGTGTGTGGTCAGCCCGCAGGCTGCCCTATGCCTTGGCTCATGCTACACGGGGAGAGCAGGGCAGGGTGGGGTGGTTCCCAGTGAAGGTGGCAGGACTCAGCAAGTGTGGGCCTGTGGAGCCAGCCAAGAGCTCACACGCCACTGATGGCCCCTCATCATCCCCAAGACTGAGGCTGCTGCTCTCTGTGACTTGGCACAGCCTCCAGGCATGGGGTTCCTAACTCTACCTGCCTGCATTCTTGCCCTATTTGTGGCTGTGACAGGCAGGGCAGGGCTGAGGGACACCAGGTGAACGAGGGCCCCTGCTCTCTTTCAG
Seq C2 exon
AACCAACACTATCATCCTGGTAGATGCGGACGGCCACGTGACCTTCACTGAGCGTAGCATGATGGACAAGGACCTCTCCCACTGGGAGACCAGAACCTATGAGTTCACACTGCAGAGCTAACCCCACCTCTGGGCCTGGCCAGTGGGCTCCTGGGGGGCCCTGCCTTGAGGGGCACTGTGGACAGGAAACCTTCCTTTGCCATACTGCATTGCACTGCCCGTGGCTTGGCCAGCATCCCCCGGATCAGGGCCCTGTGGTTTGCGTGTTACCCATCTGTGTCCCCATGCCCAGTTCAGGGTCTGCCTTTATGCCAGTGAGGAGCAGCAGAGTCTGATACTAGGTCTAGGACCGGCCGAGGTATACCATGAACATGTGGATACACCTGAGCCCACTCTTGCACATGTACACAGGCACTCACATGGCACACACATACACTCCTGCGTGTGCACAAGCACACACATGCAAGCCATATACATGGACACCGACACAGGCACATGTACGTGCACAGGTGTGCTACACATGTGCACACATGCACAGTTGCACAGACACACACACACAGGTGCACACACACGATGCCGAACAAGGCAGAAGGGCGACTCTCACCTCTCATGTGCTTCTGGCCAGTAGGTCTTTGTTCTGGTCCAACGACAGGAGTAGGCTTGTATTTAAAAGCGGCCCCTCCTCTCCTGTGGCCACAGAACACAGGCGTGCTTGGACTCTTGACAAGCAGACCTGCTCCTGCAGAGGAGACAGCCACATTTGGAATTGGGCACCGAGAAGACCTGAGAAAAACCCACTCTCTCTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCAAGTTCAAGCAATTCTCCTGCCCCAGCCTCCTGATTAGCTGGGATTACAGGCGTGTGCCACCATGCCCAGCTAATTTTTGTGTTTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTCTTGAACTCCTGACGTGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCCGAAAAACCCACTCTCATAACAGAAGTGCAGACTCATTGCTAGATTCAGTGCCCTTGAGTGTGCCAGAGGTCCTCTGTGTTTGAGACAATCCTGTGTGTGCCAGGAGGCTCCGTGTGCACCAGGGGCTCTCAGAATCCCGCTTACCCAGCTGGAGACCATGCCTCTGGCAGCCCCATCTCAGCCAGCCCTGCTCTCTCCCTCTTCCCTCCAGGTGAGGCAAACTTCATAGGAATCTGTACCTGAATGTGAGCTCCTGATAATAAAACTCTGAGGCTTTGGTGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183597-C22orf25:NM_152906:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=PD(10.6=92.3)
A:
NA
C2:
PF057427=NRDE=PD(12.9=85.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATGCTGAGCAAGTACG
R:
TGGGGACACAGATGGGTAACA
Band lengths:
342-1441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)