DreINT0160188 @ danRer10
Intron Retention
Gene
ENSDARG00000056550 | tango2
Description
transport and golgi organization 2 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040808-42]
Coordinates
chr5:26120807-26122523:+
Coord C1 exon
chr5:26120807-26120911
Coord A exon
chr5:26120912-26121020
Coord C2 exon
chr5:26121021-26122523
Length
109 bp
Sequences
Splice sites
5' ss Seq
AAGGTCCCG
5' ss Score
-0.18
3' ss Seq
TACCTGTGTGTCCATCACAGGAC
3' ss Score
9.12
Exon sequences
Seq C1 exon
AAACACCCCAGACCCTGCACAAGAGAGTCAAGGTGTAGGCTACAGTAATGCCATGCTAAGAGCGCTGTCTGCAGTGTGTGTTCGCTCACCGGGATACGGCACAAG
Seq A exon
GTCCCGTCATTCTCTTCCTATTGTCATCTCCATAACCAATTCATACACTTTAAATCTCACCCTGCAGTCCTGAAGTCTAACCAATGTCATACCTGTGTGTCCATCACAG
Seq C2 exon
GACCAATACAGTCATACTCATTGACAGAGAGGGAAACGTCAGCTTTACGGAGCGCACCATGCAAAACTGTGACATCACCCAGTGGAGCACGAACAGCTTCCACTTCAGACTGCAGGAATGAGGGCCAGAGTCGGGGCCAATGGAAGAGATCTTTCACGGTGTGCCTTTATCCAGCCATTATCTGCTCAAGCCATGCAGCACCACTGTTTCTACCAGTATGAACGTCAAGGTTTTCCTGTTTACATGGGAAAGCAGTTAATTAATATTATTATTATTATTATTATTATGCTCTGTTCTGAGAGGAAGCTTGATTGCACTTTCTTTTTCTCTTTCTTTCTTTTGTTTTTTTTAAAGTAAATCTTCTATCTAATTTAGCTCAATAACCAGTGAGGCCCACACTGAACATATGTCCATAACCTCATATTTCTATACAGTTTACAGTATTCAATTCCATCCACAGATTGTTTTTTCCTCAGATCGGTTCAAAAAATTCCAGTGATTCCACCTGGATGTCATTACACTGTAAAAAAATGCTGGGTTCCACTCAATTGATTTGTGTAGGGGCAACATGAGTAAATTAAGTTAACGTTTTTACAAATTTAAGTAGATTGAACGTAAAACAATCAAGTTGTCCCAAAAACATTAAGAATTTTTTTTTCTAGCTCATTTTAATCAAGAAGTTTGAATAAACGGCTTTTTTTTTGTTTTTTGTTTTGTTTTTAGTGTATGAGGTATAGTTTTCAGAACATGGGGTTCTCTCTGCTTCTGCTAAAGGTGTAAGTCACCCAAAAATGATCAATTCTGATTTTTGATGTTAATTTACCCACCCTCAGGGCATCCATTCTTCTTTATTTAGCTGAAACTGTGGTCATGGATTATTTAAAATGCAAGTAGACATATATTGGTACTTTGAGATTAAAAAGAAAACAAAGCAATTTAACAGTCATGGCCCCTGATGATACATTCAGGTCTAATTCAGCAAAAATGCTAGCCTGTGCAAGAAACAGAACATTATTTACAACGTTATTATTATTATGTAATTCACATCCTCTGCAAACAATCGAGAGAACATTCACAAGCACCGTAATAAAGTTTGTAGAGATATGTTGGGAATTAGTAAAACGTTAGCCTCCCTAGTAATAATAGAAACACATTAGTTTCACATAATATTAATAGATAAGCCTTTGTAAACTCAGCACAATTGTCAGAGTATTACATTTGATTTGCTACAGTAGTTTATGTTAAGTTGCCTACATCTTTGGCCTGATAGTGAGTAAACTAACAGCACTTAACTTTTTCCATCTATCACAAGTGAAGTGGTTATTTATGAAAAATGTGAAACAATGTTATTTATCATCCACTGAATCCAGTTTTATCCCAAACTGTCATTGGCATGCAACGCTGTTGGGAAAGAATCGTTTGAGGATTAAGATGTTTACTGCCAAAGATTAATTGTTACAGTTACAATCTTGGAACACAAAATAAATGGTCTTCATAATTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056550:ENSDART00000079064:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(13.0=100)
A:
NA
C2:
PF057427=NRDE=PD(13.0=85.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCACAAGAGAGTCAAGG
R:
GGCACACCGTGAAAGATCTCT
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]