BtaINT0145039 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012421 | TANGO2
Description
Bos taurus transport and golgi organization 2 homolog (Drosophila) (TANGO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035328]
Coordinates
chr17:74981983-74982902:-
Coord C1 exon
chr17:74982798-74982902
Coord A exon
chr17:74982485-74982797
Coord C2 exon
chr17:74981983-74982484
Length
313 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TGGGCCCTGCACTCTTTCAGGAC
3' ss Score
8.24
Exon sequences
Seq C1 exon
GCAGCTGCCAGACCCAGCCATCGAGGCCCAGGGCAGGGAGTACGTGCGACCCATCCTCAGCAAGTACGCGGCTGTGTGCGTGCGCTGCCCGGACTACGGCACCAG
Seq A exon
GTAGGACGGGCAGGCACAGGTGCTGCCTCCGCCCCGGGGGGCCCACCTCCCCAGCCCCTCCTGCCACCTCCCTGGCTGGGAGCCCTGGGCGTTCAGCCTCGTCAGCCCAGGGCCCACCCGCCGAGTGGTGGCGGGGTGGTCCCGCTGGGCAGAAACCTGTGGGGCCCCCAGCTCAGTGCCCGCCCCCCCCACCCCGGCCCAGAGGCGCTGGGCCTGAGCGCCCTGAGACCGGACCAAGCCAGGGCCCATCGAGGCCCCTCCCACCTTGGATCTGCACCTTTCGGGGCTGAACATGGGCCCTGCACTCTTTCAG
Seq C2 exon
GACCAGCACGGTCATCCTTGTGGATGCAGATGGGCACGTGACCTTCACGGAGCGCAGCATGCTGGGCTCGGACCCCACCCGCTGGGAGACCACTACCCATGAGTTCCGGCTGCAGAGCTAGCCCGCAGCCGCTGTGGCTGGGGCTCCCGGGAGGCCCTGTCACAGGTACTGCCCGTGAGCCGGCCAGCGTTCCCCAGGGCAGAGCCCTTTGTGTGAACCGTCTGCATCCTTAGGTCTAGCTCGGGGTCCAGCCTTGGGCCCTGGAGATGACAGCGGCCTGCAGTCAGGGTGCTGGGCCTCCCCTGCCCGTGTGCAGAGCCCCATGTGACACACGTCATGCAGGTGTGCACACACTGCAGGCCATAGGCATGTGTACACATGCTCAGACGCACAAATGCTCCAGGCGTGCCACCCACAAGAGCCGGCCCCACGACGAGTGCCTCTCACCCTTGTGTGCTTCGTCCTGTGAGTCTCGCCACGATCCAGACACGACAGTGGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012421:ENSBTAT00000016486:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(28.7=100)
A:
NA
C2:
PF057427=NRDE=PD(28.7=85.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACCCAGCCATCGAGG
R:
GACCCCGAGCTAGACCTAAGG
Band lengths:
346-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development