DreEX0077240 @ danRer10
Exon Skipping
Gene
ENSDARG00000056550 | tango2
Description
transport and golgi organization 2 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040808-42]
Coordinates
chr5:26117790-26122523:+
Coord C1 exon
chr5:26117790-26117937
Coord A exon
chr5:26120807-26120911
Coord C2 exon
chr5:26121021-26122523
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCACCTTTGTTTCCTCCAGAAA
3' ss Score
10.61
5' ss Seq
AAGGTCCCG
5' ss Score
-0.18
Exon sequences
Seq C1 exon
GAATCTATGGGTTGAGTAACTCTCTTTTGGAAACTCCGTGGAGGAAACTGCAGCACGGCAAACAGCTGTTCAGCAGTGTAGTGAGCAAAACGCTGCCCCCCGATGGCTTAGTGCAGGAGCTGCTCCACATCCTCAATAACGAGGAGCT
Seq A exon
AAACACCCCAGACCCTGCACAAGAGAGTCAAGGTGTAGGCTACAGTAATGCCATGCTAAGAGCGCTGTCTGCAGTGTGTGTTCGCTCACCGGGATACGGCACAAG
Seq C2 exon
GACCAATACAGTCATACTCATTGACAGAGAGGGAAACGTCAGCTTTACGGAGCGCACCATGCAAAACTGTGACATCACCCAGTGGAGCACGAACAGCTTCCACTTCAGACTGCAGGAATGAGGGCCAGAGTCGGGGCCAATGGAAGAGATCTTTCACGGTGTGCCTTTATCCAGCCATTATCTGCTCAAGCCATGCAGCACCACTGTTTCTACCAGTATGAACGTCAAGGTTTTCCTGTTTACATGGGAAAGCAGTTAATTAATATTATTATTATTATTATTATTATGCTCTGTTCTGAGAGGAAGCTTGATTGCACTTTCTTTTTCTCTTTCTTTCTTTTGTTTTTTTTAAAGTAAATCTTCTATCTAATTTAGCTCAATAACCAGTGAGGCCCACACTGAACATATGTCCATAACCTCATATTTCTATACAGTTTACAGTATTCAATTCCATCCACAGATTGTTTTTTCCTCAGATCGGTTCAAAAAATTCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056550_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(18.2=100)
A:
PF057427=NRDE=FE(13.0=100)
C2:
PF057427=NRDE=PD(13.0=85.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCTTAGTGCAGGAGCTG
R:
GCTGCATGGCTTGAGCAGATA
Band lengths:
246-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]