HsaEX6025850 @ hg38
Exon Skipping
Gene
ENSG00000183597 | TANGO2
Description
transport and golgi organization 2 homolog [Source:HGNC Symbol;Acc:HGNC:25439]
Coordinates
chr22:20061530-20065358:+
Coord C1 exon
chr22:20061530-20061683
Coord A exon
chr22:20063338-20063442
Coord C2 exon
chr22:20064542-20065358
Length
105 bp
Sequences
Splice sites
3' ss Seq
CACTTCTCTCCATCCTGCAGGCA
3' ss Score
9.95
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
GCACCTACGGGCTGAGCAACGCGCTGCTGGAGACTCCCTGGAGGAAGCTGTGCTTTGGGAAGCAGCTCTTCCTGGAGGCTGTGGAACGGAGCCAGGCGCTGCCCAAGGATGTGCTCATCGCCAGCCTCCTGGATGTGCTCAACAATGAAGAGGC
Seq A exon
GCAGCTGCCAGACCCGGCCATCGAGGACCAGGGTGGGGAGTACGTGCAGCCCATGCTGAGCAAGTACGCGGCTGTGTGCGTGCGCTGCCCTGGCTACGGCACCAG
Seq C2 exon
AACCAACACTATCATCCTGGTAGATGCGGACGGCCACGTGACCTTCACTGAGCGTAGCATGATGGACAAGGACCTCTCCCACTGGGAGACCAGAACCTATGAGTTCACACTGCAGAGCTAACCCCACCTCTGGGCCTGGCCAGTGGGCTCCTGGGGGGCCCTGCCTTGAGGGGCACTGTGGACAGGAAACCTTCCTTTGCCATACTGCATTGCACTGCCCGTGGCTTGGCCAGCATCCCCCGGATCAGGGCCCTGTGGTTTGCGTGTTACCCATCTGTGTCCCCATGCCCAGTTCAGGGTCTGCCTTTATGCCAGTGAGGAGCAGCAGAGTCTGATACTAGGTCTAGGACCGGCCGAGGTATACCATGAACATGTGGATACACCTGAGCCCACTCTTGCACATGTACACAGGCACTCACATGGCACACACATACACTCCTGCGTGTGCACAAGCACACACATGCAAGCCATATACATGGACACCGACACAGGCACATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183597-'54-38,'54-35,63-38
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.169 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=PD(1.1=1.9),PF057427=NRDE=FE(40.5=100)
A:
PF057427=NRDE=PD(1.6=5.6),PF057427=NRDE=FE(48.6=100)
C2:
PF057427=NRDE=PD(12.9=85.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCAAGGATGTGCTCATC
R:
AAGGTTTCCTGTCCACAGTGC
Band lengths:
249-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains