GgaEX6013392 @ galGal3
Exon Skipping
Gene
ENSGALG00000002056 | Q5ZI44_CHICK
Description
NA
Coordinates
chr15:1286256-1288928:+
Coord C1 exon
chr15:1286256-1286409
Coord A exon
chr15:1286517-1286621
Coord C2 exon
chr15:1286731-1288928
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTACAACTTTTTCAGTCA
3' ss Score
5.91
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GAATATATGGACTGAGTAATTGTTTGTTGGATACACCATGGAAGAAACTTCAGTATGGGAAACAGCTTTTCACAGAAGTCATCAACAGAAGTCAAGACCTTGCCAAAGAAGACTTGGTGCAGGAGCTCCTTACAGTGATGAATAATCAAGAGCC
Seq A exon
TCAGTTACCTGACCCTGCAATTGAAGACCAAGGGAAGGAATACATACGTCCTATATTGAACAAGTATGCAGCTGTGTGTGTTCGTTGCCCGGGTTATGGAACAAG
Seq C2 exon
GACAAACACAGTCCTCCTCATTGATTCAGAAGGAAACGTTACTTTCACAGAGCGCACCATGATCAATGAGGATGTCAGCCAGTGGAAAACAAGCAGCTATGAATTCAAACTGCACATGTAACAACTTTCCATTTGAATGCATTGTAATAAAAGCAATGAAAGCAAGCTGTTAAGCTCCAGGAAATGTTTTCTGTCAGCCTCTGGAAGCCAAAAATAGCAAGAGAAGCAAAAGTTGTTTTAAATAGGTTGTGTAAGCTATCAATCTCACAAATCCTCTGCATAAAACAAGTTTCTTACTGTTTTTACATTAAGTTGCAACTTCAAAACAAATTTCTGTCCATATGGCTTTGTTTTATCATCTAAGCTTAAAAAATTGTAAAACCCAGTGGAAAATACTAACAGGATACTGTACCTTGCATATAACTTCTTTATTTTTATTTCAGCCAGAGCTGAAAATATATGCAGCTTCTTGGAGAATCGACCTTCAGCTAACTTTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002056-'13-8,'13-7,14-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.222 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(18.8=100)
A:
PF057427=NRDE=FE(12.9=100)
C2:
PF057427=NRDE=PD(12.9=85.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACTTGGTGCAGGAGCTC
R:
GCTTCCAGAGGCTGACAGAAA
Band lengths:
255-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]