MmuEX0013489 @ mm9
Exon Skipping
Gene
ENSMUSG00000013539 | D16H22S680E
Description
DNA segment, Chr 16, human D22S680E, expressed [Source:MGI Symbol;Acc:MGI:101825]
Coordinates
chr16:18300920-18308133:-
Coord C1 exon
chr16:18308063-18308133
Coord A exon
chr16:18302779-18302883
Coord C2 exon
chr16:18300920-18301645
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGGCCCTCTGTTCTTCTAGACA
3' ss Score
9.29
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
CACGTCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCTGAGCCTATTGTCTTGACACCAG
Seq A exon
ACAGCTGCCAGACCCAGCCATTGAGGACCAGGGCCAGGAGTATGTACAGCCAATTCTGAACAAGTATGCAGCTGTGTGTGTCCGCTGTGCCACCTATGGCACCAG
Seq C2 exon
AACCAACACCATCATCCTTGTGGATGCAAATGGCCACGTGACCTTCACTGAACGGAGCATGCTGGACAAAGACACCTCTCGCTGGGAGACCAACACCTATGAGTTCACACTACAGAGTTAGCCCCTGCCAGGTTCCAAGGATGCTGTTCCTGAAGGGCCAGCGTGGACAGGAACCTTTCACGGCCACTCTGCAGGTCTGTGGCTCAGCCAGCACCCCTAGGACCAGGTTGTTCTGATTTGTGTCCTCATACTCAGCTCAGGGTCTCTCTTTGTACCAATGGAGAACGACAGAGTTAAATACTAGGCGTGAGTCAGGCCTGGGTATGCCGTATGTGAACACACAGACCTGTTTGTTGCTCAACCCCACTGCCACTGTGTGCACCTGACTGATGAGTAGGATCATGCCTCTCACCTCACACGTTTGGGCAGTGGGTCTCATCCATGGACGGGTAACAAAAGCAGACTCTTTACAGAAACTGGAGATCCTGTATTTGTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013539_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.194 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(15.9=100)
A:
PF057427=NRDE=FE(12.9=100)
C2:
PF057427=NRDE=PD(12.9=85.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAGCCTATTGTCTTGACA
R:
AACAACCTGGTCCTAGGGGTG
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: