BtaEX6074414 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012421 | TANGO2
Description
Bos taurus transport and golgi organization 2 homolog (Drosophila) (TANGO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035328]
Coordinates
chr17:74981983-74983349:-
Coord C1 exon
chr17:74983195-74983349
Coord A exon
chr17:74982798-74982902
Coord C2 exon
chr17:74981983-74982484
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACGCCGCCTCTGTCCTTCAGGCA
3' ss Score
8.85
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGGACCTATGGGCTGAGCAACGCGCTGTTGGAGACGCCCTGGAGGAAGCTGTGCTTCGGGAAGCAGCTCTTCCTGGAGGCCGTGGAGCGGGGCCGGGAGCTCCCCAGGGATGCGCTGGTGGCCCAGCTCCTAGCTGTGCTCAGCAATGACGAGGC
Seq A exon
GCAGCTGCCAGACCCAGCCATCGAGGCCCAGGGCAGGGAGTACGTGCGACCCATCCTCAGCAAGTACGCGGCTGTGTGCGTGCGCTGCCCGGACTACGGCACCAG
Seq C2 exon
GACCAGCACGGTCATCCTTGTGGATGCAGATGGGCACGTGACCTTCACGGAGCGCAGCATGCTGGGCTCGGACCCCACCCGCTGGGAGACCACTACCCATGAGTTCCGGCTGCAGAGCTAGCCCGCAGCCGCTGTGGCTGGGGCTCCCGGGAGGCCCTGTCACAGGTACTGCCCGTGAGCCGGCCAGCGTTCCCCAGGGCAGAGCCCTTTGTGTGAACCGTCTGCATCCTTAGGTCTAGCTCGGGGTCCAGCCTTGGGCCCTGGAGATGACAGCGGCCTGCAGTCAGGGTGCTGGGCCTCCCCTGCCCGTGTGCAGAGCCCCATGTGACACACGTCATGCAGGTGTGCACACACTGCAGGCCATAGGCATGTGTACACATGCTCAGACGCACAAATGCTCCAGGCGTGCCACCCACAAGAGCCGGCCCCACGACGAGTGCCTCTCACCCTTGTGTGCTTCGTCCTGTGAGTCTCGCCACGATCCAGACACGACAGTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012421-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.306 C2=0.208
Domain overlap (PFAM):
C1:
PF057427=NRDE=PU(41.8=98.1)
A:
PF057427=NRDE=FE(28.7=100)
C2:
PF057427=NRDE=PD(28.7=85.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTCAGCAATGACGAGG
R:
AAGGATGCAGACGGTTCACAC
Band lengths:
253-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]