GgaINT0007913 @ galGal4
Intron Retention
Gene
ENSGALG00000002056 | C15H22ORF25
Description
chromosome 15 open reading frame, human C22orf25 [Source:RefSeq peptide;Acc:NP_001007837]
Coordinates
chr15:1267349-1268605:+
Coord C1 exon
chr15:1267349-1267419
Coord A exon
chr15:1267420-1268451
Coord C2 exon
chr15:1268452-1268605
Length
1032 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
TGGTGCATGCACTTGAATAGGAA
3' ss Score
3.41
Exon sequences
Seq C1 exon
TACCACCAAAGGAGATGTAATTTGCTACTATGGAAACAAAGGAGACCCAGAACCTGTTTTCTTAAATCCTG
Seq A exon
GTAGGTTTACGTCTAGAAGGTTGGAATATTACTCTGTTACTTTAAAGGAATCAGAATATAACCATATTGCTCCAGTATTTTGGCTGTTCAAGCATTGTCTCTGCTAACTTTCCTTGCATTCTTAAAAATAAATGCTTAAATTCATTTAAATATTTGCTAATACATCTCAGTACAGAGTCAGTAGTTTACAACAGCTTCTATCTTTGTCGGCGTTCCAATCTCTGCTGCAATTACTGGAATGTTACTTAATTATGATTAGGGGACAAAGGTCTGTCTTGAGGAATGGAATTTTCAAAGTCAGAGGTAACTTTTCTTACCTTGCAGTTAAGAAGATAATTTGACTGTGCCCCCCTAGGGACAGAGTTGGCTTTAAAAAATAATGAACTTTTATCTTTAGATCAGGTAGACTGATTTAAAATATTTAAAATCTAGCCCTTTGTTAGCCAGCTGTATAGGAGAGTCCAGTATTCATCACCAAAGACCAACAGAAATGGACTGAGACATGCAGAATGCTTTAGCTGGTTGATAACAGTTGTGAAGAAGTATGTGTTAATATACAAAGGCTTATTTTGCTTGCTTAAAAAAAAGTCAAAGTGTTGCTGTCAATAGGCAAATAGTGACTGTACCAGTTGTGGCATAAATTCTTGGAAACAACTATTCGATTTTTGTACAACTACAAGCACAACAGATTTTAACAAACAAAAATCTGGTCACTCCTTTGTGTTACCTCTGTATGATATGAGACTGAATTTCATTAACTTCATAATGGATGAAGCTTGGAGGATTGGAATTGCTTTACAGAAATAGAGCCAACAATGTAGTGATTAAGAGTTACTTTGTGTTTAGGCTATGCAATCCCCTAGTGGGCTGAGAGTTATTTTGTGTTTAGGCTATGCAAAACCCTCATGTTTCTGTTAGTGTTGTGCTCTGGGCAGGGAATCTTTGGTATTTCACTAAAGTCTGGGAAAAGGTTAAGTTGTTTTATTAAGAGTTACATGCCTTTTTTTTCCTTTGGTGCATGCACTTGAATAG
Seq C2 exon
GAATATATGGACTGAGTAATTGTTTGTTGGATACACCATGGAAGAAACTTCAGTATGGGAAACAGCTTTTCACAGAAGTCATCAACAGAAGTCAAGACCTTGCCAAAGAAGACTTGGTGCAGGAGCTCCTTACAGTGATGAATAATCAAGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002056:ENSGALT00000003199:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(8.8=100)
A:
NA
C2:
PF057427=NRDE=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCAAAGGAGATGTAATTTGCT
R:
GGCTCTTGATTATTCATCACTGTAA
Band lengths:
224-1256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]