HsaINT0023204 @ hg19
Intron Retention
Gene
ENSG00000183597 | C22orf25
Description
chromosome 22 open reading frame 25 [Source:HGNC Symbol;Acc:25439]
Coordinates
chr22:20043466-20049206:+
Coord C1 exon
chr22:20043466-20043536
Coord A exon
chr22:20043537-20049052
Coord C2 exon
chr22:20049053-20049206
Length
5516 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCGCTGATTGCTCCTCACAGGCA
3' ss Score
6.92
Exon sequences
Seq C1 exon
CACAGCAAAGGGAGACGTCATTTGCTACTATGGGAACCGAGGGGAGCCTGATCCTATCGTTTTGACGCCAG
Seq A exon
GTGAGCCTGCCCTGGCAGCCTGATGGGGTGGGGGACTGTTTCTATGCAGAGGTCACCCTTGTGCTTTTTAGAGACCAGGCACTTGTCATATTACTCTTCTGAGATGACTTTGTGGCCATTTAAGTGCCTTATGGTCTGTGGGCACCTTGCCCTGCACCTGGACACTTCAGAGAGCCCTGGCTCCCTGCTCACCCCCTCCCCATGGGCTTTTCCTGCTGAGCAAGGTGCGCCCCTGTTCTGGGCTTCCCACCGCAGCCCTGCAGCCCAGCCGGCCACCCCCAGCCTCACTTCCTGTGCCGTCCCAGTGTGCCCTGTGCCTGTTCCTTCTCAGAACCTCTGGAGCCATCACCACCTGGGGTTCTTGCCTGGTCTGCTCCCTGACGCACAAGTACACACCCCACTCAAGCCCCACACAGATGCACGCCTCCTGCACCCAGTCCCCAGTCTGATCCCCGGTCCCCATCCTCAGGGCCTCGAGCCCCTCTGCGCCAGGTCACACTCCACGGCTGGGCCCTTCCTGCCCTGGCTCTGCACCACTGCCCAGGCTGTGCCTCCTGCTACATGCCCTTCCTTTCCCCCTCCTCGGGTGCTGCGATTTCCTGGAAGCTTCCTCTGCCAGTGCCCCAACCTGGAGAGAATGTGTCACATTGCCCCCCTCTGCAGCCATGTTCTGGGAGGGAGGTCTGCATCTTGTCCCAGGTCTGGTGCCAGGACAAAGCAGCACTCCTGGGAAATGGCATTTCCCCTGGGTGCACAAAACTGTAGGGACCATAGCCTAGGTTCCGGGGACTGCTGGCTCACTCACTCCCACACTCGCTGCCCACAGACACTCCTCGCTGGTGGCATCGTGGAACTCTGTGCCTTAAACGCCCGCTCTGGTCCCTCTACTCAAGCTGCTGGCTCACACAGGGTGTTCCGGCGCCTGGGGAGTGTGTCAGTGCCCTTAGCGCCACCCACACCCCTCTGTGAGGGGGCTCCCTCACACCCCTGGCTCCTCTGAAGCTCCATGCCCACGTCACACAGACTTTCTTTTGCATTTGGCACAAATCACCAAGTGAGGTTGCAGGTCACAGGTGCACACCTTCCCACTGGGTGTACACGGTGGAACTGAAGCCCCAGGCGTCCCTGGAGGGGCCCGAGGGAGATGATAAGCAGTCCCCAGGACAGCTGAGTGGCCCCATCCCACCTGCATCTTAGGGGGCTGGTGGTGCTGACGGGCTCATCATGAGTCCTGTGGTCCTTGCCTGGCCCACACTGGAGCTGGCTTCCAGCTTCCCACGTCTGCCCAGTGATGTTTCATCCACAGATAGGCCCAGCCCCCATTTGCTAGGGTGGTGCCCAGACCCGAACCCCTGGGCTAGTTGGGATCTCCAGAGGAGGCATCTGCCTGGAGGGTGGCTTCCAGTGTGTCCCACCCACTGCCCCCACGCCTACCAGCTGGTGCCCTCTCCTCCACCTGGGGCTTATCCTTCCGGCCACCCTCTGTGACCCTGGTCTTCCCCTCCCTACCTTGGATACAACTGTGGGCAGCCCACCTGAGCTCCCAAGAGCTGGGCAGTGGCACAGACACAGAGACTACCAGCGAGGCAGGGATGTGGCCCCAGAAGGTCCTGAGCTTGCAAAGGATTGTTCTGGCTGTCTCAGCCAGCTCTTGCTGTTCCACCTGCCCCAGAACCTCCGCATCAGTTGAGGGTCGTGGGGTTGGAATGTGTGGCGAAGTAGGTCTGTGGCAGTGGAGTTGGGCCATGCTGAGCCTGTGACTGCCCAGGAGAGAATTGGAAACTAAAAGGTGCAAAAGCAGTCAGAGACTCCCTACCACCCCCTCACTGTGAACATTGGCCCAGCGGCCTCTGGGGCAGTCGCTGTAACCATCCACGTGGCATCCTCGGTTCTCAGAGGCTGAGACCTCCGTGGCTGGAGATGCTTATTTTCTGCTCAGTTGTTGTTCTGTAGAACTTATTTCTGTCTACATCCTGCCTCATCCCTGAGCCTGCCCCACCTGGTCCACATTGCCTTTTTTTTTTTGATAAAGTTTTATTGAGATATGACTGACTAGCGGCACAGTTCACCCATTTAAAGTGTATCATTCAGTAGGTTTCGTTTCATTCACAGAGTTGAGCAACTGTCATCACTACCTAATTCCAGGACATTTCTTGATCCCCAAAGAAAGCCATACCTGTCAGCAGCCACTCCCCATTCCCCGTCTCTTCAGCGCCTGCAACCTTTAATCTGCTTTCTGTCTCTGGATTTGCCTATTCTGGACACTTTGTATAAAGGGAATCCTATAATATGTAGTTTAGGGGACTGACTTTTTTCACTTAGTGTTGTCGTCTAAAAACTCACCAGTGGCGAGGCACGGTGGCTGACGCCTGTAATCCTAGCACTTTAGGAGGCCAAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAGACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGTTGGCAGGTGCCTATAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACACAGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGTACTCCAGCCTGGGCGACAGAGTGAGATTGCATCTCAAAAAAAAAAAAAACAAAGAAAAACTCACCAGCATGGCTAAATGATAGAAAGGAGAGTTTTATTTGCCATATCAGTTTGCAGACCCGGAAGAGAGAGTCTCTAGCATGGACTGAGGTGCTCTCTTTGAAGAGGGGAAGGGCAGTTTGAGTTTTATGCCTCCCAAGGTCCATATCACACAATAGAGTCATACATATTCAGCAGGTTTGGGGAAAAGCCATACATATTTATGAGGGGACCCGAGAACATATGCAATAGATAAACATACATGTAACATACATCCCATGTTCACTTTGGGGCAGGGTTTTAGCATTAAAATGAGGTAGAATCTGGATCTTTCCATCAGAAGGTGAGCTCTAGGACACAGTTGGAGTGCAGCCTCTATGAACTGCTGAAACTGGCTTATGGTCTGTAGTTGCTTATCAGAAAAGAGTGTTTGAAGGCTGGTTCTCTGTCCAGTCAGGGTTGTGGTGGTCTGGGCTGTCAAGAGTTAGGAGGGTCTGATAACGTGTGTGATCTCTACTGTTGTGAGGGAGTTTATCAAGACTGTGGTTTTTCTTGTAGCTGTAGGAATTTAGGGAGTTGCTGAGACAGCTGCCCTGAACCCTCGAGCCAGTTGGTACTTTTTGTTTCTTCCCTTTATCCATTAATGGACACTTGAGTTTTTTCCACCTTTTGGCTGTTGGAAACAGTGCTGCTCACAGTGTGACCTCACAGCATTTGTGTGGTCATATGTTTTTATGGCTCTCATGTGAATACGTAGGAATGGAGTTGTTAAGTCGTATGGTAACCCTGTTTAACCTTTTGAGGAACATCCAAACTGTTTGCCAAAGCAGCCGCAGCATTATACATTCCCACCAGCAGTGTATGCGGGTTGCAGCTTCTCTGAATCCTCACCAAAACTTGCTATGTTCTGTGTTTTTGATGATAGCCACGATAGTGGGTGTGAAGTTGTGTGGACTCGTGGTTTGGTTTGCGTTTCTCTGATGGCTATGATGTTGAGCAGCTATTCTCATGCTCGTTGGCCATTTGTATGTCTTCTTTGGAGAAATGGTTATTCAGACTGGGTTGTCTTTTTGAGTTATAGGAGTGACTTATACATTCATTCTAGCTACAAGTCTCTTATTTAAAGCACAAAGCTTAAAATTTTTAAGTCCTATGTCTCTCTCTTTTTTTTTCTTTTGTTGCTCATGCTTTTGGTTTCTTATCTAAGAAACCATTGCCTAATCTAAGGTCATGAAGCTTTCCCCAATACTTTCTTCTTAGAGTTTTATAGCTTTTGCTCTTTCACTTAGGTCTTTGGTTTGACTTAAGTTAACTATTTTTTTTTTTTTGAGACAGGGTCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAGTCATGGCCCACTGCACTGTCAACCTCCTGGGCTTAAGAGATCCTCCCAGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAAACCGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTATCCAGGCGTGGTGGCGGGTGCCTGTAGTCCCAGCTACGTGGGAGGCTGAGACAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACCGCACTCCAGCCTGGGCGACAGAGTAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGAGATCCTCCCTCCCAAGTAGCTGGGACTGCAGATGTGTGCCACCATGTTCAGCTAACTTTTATGTTTTGTAGAGATAAGGCCTCACTATTTTGCTATTTTGCCGAGGCTGGTCTTGAACTCCTGGGCTCCAGTGATCCTCCTGCCCCAGCCTCCCGATGTGCTGGGATTATAGGAGTGAGCCACCTCTCTTGACCTGAGTTAACTTTTGTGTATGGTGTCAGGTAGAGTCCAACTCCCTTCTTTGCCCATGACTATGCAGTTCAATGGTCTTCCATGTTGTTCATGATGGAAAAAGCACTGTGACACCTGGGGCTGGCGGCTTGGCTCTGGGGGCCCCAGCAGAGCCAGGCTGTCTCCCTGGGAAATGCCTCGGCCAAGATATTCTCCTGGAAGTCTGACAGGGAGAGGGTGGTGTCTTGGTCTCCCTGGTGCATCATTTGGGGTGCTTGGCTCCCATCAAGCCCACCCCTGCTGCCCTGGCCTCTAGAGAAGAGCCTCTGAGGTGAGGTGCTTCTCCACCTCAAGTCCCTGCCCTTCACTTTCTGTGACATGAGAAACCCTTTTCCTGTTGGCCATGCCTTCTGCCAACACTCTGGGAGCTTGTTCAGAGTCTGTGCAGAGCCCCCCGGCTCTCCTAACCTGGGGCCTGGCTGGTACGCAGAGGTGGGCCATGCTCTGCTGAGGCCCAGCCTACACCTGTGCCCACTGTGTGGCGCTGTTGGGGGTTCCCCAAACAGGGACATGATTGTGGTGGGTGCCTCCTGGCCTCTGGTGGCTAATTCTCCCACTCTTGAACTTCTCAGGTGGCCCCCCAACCTGGCGTGAGGTGAAGAGGTTCCCTCTTGGCTGTCCCCTTTGCCTGTGAGATCTCAGGTTGCTCATTTCTTATTCATCCATCCATCGAGGCTGCTGGGCATCTGTGCCTTGTGGTCTCCTGTGGGTGCCCGCTTCCGCCTACTGCTGAGTTCTCCTCTCCTTGCCATGCCATCAGGTCAGGAATGAGCATGGGGAAGGAGCTGGAGCATGGAGCGGCTTGGCCTCAGTCTGGCCTGATTTCATGGTCCCCAGCTGTACCCCGTGTTAGGTGGGTGGCAGGTGGCAATTTGCCCTGACATGGCACAGCAGGGCCTCTGCATGGCCCGCTGATTGCTCCTCACAG
Seq C2 exon
GCACCTACGGGCTGAGCAACGCGCTGCTGGAGACTCCCTGGAGGAAGCTGTGCTTTGGGAAGCAGCTCTTCCTGGAGGCTGTGGAACGGAGCCAGGCGCTGCCCAAGGATGTGCTCATCGCCAGCCTCCTGGATGTGCTCAACAATGAAGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183597-C22orf25:NM_152906:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=PD(12.8=54.5)
A:
NA
C2:
PF057427=NRDE=PD(1.1=1.9),PF057427=NRDE=FE(40.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)