HsaEX0010603 @ hg19
Exon Skipping
Gene
ENSG00000183597 | C22orf25
Description
chromosome 22 open reading frame 25 [Source:HGNC Symbol;Acc:25439]
Coordinates
chr22:20043466-20050965:+
Coord C1 exon
chr22:20043466-20043536
Coord A exon
chr22:20049053-20049206
Coord C2 exon
chr22:20050861-20050965
Length
154 bp
Sequences
Splice sites
3' ss Seq
CCGCTGATTGCTCCTCACAGGCA
3' ss Score
6.92
5' ss Seq
GGCGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
CACAGCAAAGGGAGACGTCATTTGCTACTATGGGAACCGAGGGGAGCCTGATCCTATCGTTTTGACGCCAG
Seq A exon
GCACCTACGGGCTGAGCAACGCGCTGCTGGAGACTCCCTGGAGGAAGCTGTGCTTTGGGAAGCAGCTCTTCCTGGAGGCTGTGGAACGGAGCCAGGCGCTGCCCAAGGATGTGCTCATCGCCAGCCTCCTGGATGTGCTCAACAATGAAGAGGC
Seq C2 exon
GCAGCTGCCAGACCCGGCCATCGAGGACCAGGGTGGGGAGTACGTGCAGCCCATGCTGAGCAAGTACGCGGCTGTGTGCGTGCGCTGCCCTGGCTACGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183597-'16-28,'16-26,23-28
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.153
Domain overlap (PFAM):
C1:
PF057427=NRDE=PD(12.8=54.5)
A:
PF057427=NRDE=PD(1.1=1.9),PF057427=NRDE=FE(40.5=100)
C2:
PF057427=NRDE=PD(10.6=92.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCAAAGGGAGACGTCAT
R:
CTGGTGCCGTAGCCAGGG
Band lengths:
176-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)