HsaEX0010603 @ hg38
Exon Skipping
Gene
ENSG00000183597 | TANGO2
Description
transport and golgi organization 2 homolog [Source:HGNC Symbol;Acc:HGNC:25439]
Coordinates
chr22:20052465-20063442:+
Coord C1 exon
chr22:20052465-20052584
Coord A exon
chr22:20061530-20061683
Coord C2 exon
chr22:20063338-20063442
Length
154 bp
Sequences
Splice sites
3' ss Seq
CCGCTGATTGCTCCTCACAGGCA
3' ss Score
6.92
5' ss Seq
GGCGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GGCTGGACATGGAGGAAGGCAAGGAAGGAGGCACATGGCTGGGCATCAGCACACGTGGCAAGCTGGCAGCACTCACCAACTACCTGCAGCCGCAGCTGGACTGGCAGGCCCGAGGGCGAG
Seq A exon
GCACCTACGGGCTGAGCAACGCGCTGCTGGAGACTCCCTGGAGGAAGCTGTGCTTTGGGAAGCAGCTCTTCCTGGAGGCTGTGGAACGGAGCCAGGCGCTGCCCAAGGATGTGCTCATCGCCAGCCTCCTGGATGTGCTCAACAATGAAGAGGC
Seq C2 exon
GCAGCTGCCAGACCCGGCCATCGAGGACCAGGGTGGGGAGTACGTGCAGCCCATGCTGAGCAAGTACGCGGCTGTGTGCGTGCGCTGCCCTGGCTACGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183597-'39-35,'39-31,54-35
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.169
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(44.4=100),PF057427=NRDE=PU(3.2=9.8)
A:
PF057427=NRDE=PD(1.1=1.9),PF057427=NRDE=FE(40.5=100)
C2:
PF057427=NRDE=PD(1.6=5.6),PF057427=NRDE=FE(48.6=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAGGAAGGCAAGGAAGG
R:
CTGGTGCCGTAGCCAGGG
Band lengths:
218-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development