HsaEX0010607 @ hg38
Exon Skipping
Gene
ENSG00000183597 | TANGO2
Description
transport and golgi organization 2 homolog [Source:HGNC Symbol;Acc:HGNC:25439]
Coordinates
chr22:20052465-20061683:+
Coord C1 exon
chr22:20052465-20052584
Coord A exon
chr22:20055943-20056013
Coord C2 exon
chr22:20061530-20061683
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCCTTGGCCTGCAGCAC
3' ss Score
8.81
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGCTGGACATGGAGGAAGGCAAGGAAGGAGGCACATGGCTGGGCATCAGCACACGTGGCAAGCTGGCAGCACTCACCAACTACCTGCAGCCGCAGCTGGACTGGCAGGCCCGAGGGCGAG
Seq A exon
CACAGCAAAGGGAGACGTCATTTGCTACTATGGGAACCGAGGGGAGCCTGATCCTATCGTTTTGACGCCAG
Seq C2 exon
GCACCTACGGGCTGAGCAACGCGCTGCTGGAGACTCCCTGGAGGAAGCTGTGCTTTGGGAAGCAGCTCTTCCTGGAGGCTGTGGAACGGAGCCAGGCGCTGCCCAAGGATGTGCTCATCGCCAGCCTCCTGGATGTGCTCAACAATGAAGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183597-'39-31,'39-23,42-31=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.044 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(44.4=100),PF057427=NRDE=PU(3.2=9.8)
A:
PF057427=NRDE=PD(12.8=54.5)
C2:
PF057427=NRDE=PD(1.1=1.9),PF057427=NRDE=FE(40.5=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACATGGAGGAAGGCAAG
R:
CAGCTTCCTCCAGGGAGTCTC
Band lengths:
168-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development