MmuEX6061305 @ mm9
Exon Skipping
Gene
ENSMUSG00000013539 | D16H22S680E
Description
DNA segment, Chr 16, human D22S680E, expressed [Source:MGI Symbol;Acc:MGI:101825]
Coordinates
chr16:18303776-18311076:-
Coord C1 exon
chr16:18310962-18311076
Coord A exon
chr16:18308063-18308133
Coord C2 exon
chr16:18303776-18303929
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTTTTGGCTTCTATTCACAGCAC
3' ss Score
7.51
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGAACTTGTGTCTCACTTTCTGACCAGTGACATGGACAGCCTGTCCTACCTGAAGAAGGTCTCTACAGAGGGCCACCTGTATAACGGCTTTAACATCATAGCAGCTGACCTGAG
Seq A exon
CACGTCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCTGAGCCTATTGTCTTGACACCAG
Seq C2 exon
GAACCTATGGGCTAAGCAATGCCCTGCTGGAGACGCCCTGGAAGAAGCTGTGCTTTGGCAAACAACTCTTCATGGAAGCAGTGGAGCAGAGCGAAGCACTCCCTAAGGACGTCCTTGTCACTCAGCTCCTAGATGTCCTCAACAATGAGGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013539-'16-18,'16-14,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.093 C2=0.003
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(14.0=100)
A:
PF057427=NRDE=FE(15.9=100)
C2:
PF057427=NRDE=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACATGGACAGCCTGTC
R:
CTCTGCTCCACTGCTTCCATG
Band lengths:
181-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: