HsaEX0010607 @ hg19
Exon Skipping
Gene
ENSG00000183597 | C22orf25
Description
chromosome 22 open reading frame 25 [Source:HGNC Symbol;Acc:25439]
Coordinates
chr22:20039988-20049206:+
Coord C1 exon
chr22:20039988-20040107
Coord A exon
chr22:20043466-20043536
Coord C2 exon
chr22:20049053-20049206
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCCTTGGCCTGCAGCAC
3' ss Score
8.81
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGCTGGACATGGAGGAAGGCAAGGAAGGAGGCACATGGCTGGGCATCAGCACACGTGGCAAGCTGGCAGCACTCACCAACTACCTGCAGCCGCAGCTGGACTGGCAGGCCCGAGGGCGAG
Seq A exon
CACAGCAAAGGGAGACGTCATTTGCTACTATGGGAACCGAGGGGAGCCTGATCCTATCGTTTTGACGCCAG
Seq C2 exon
GCACCTACGGGCTGAGCAACGCGCTGCTGGAGACTCCCTGGAGGAAGCTGTGCTTTGGGAAGCAGCTCTTCCTGGAGGCTGTGGAACGGAGCCAGGCGCTGCCCAAGGATGTGCTCATCGCCAGCCTCCTGGATGTGCTCAACAATGAAGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183597_MULTIEX1-2/3=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.078 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(44.4=100),PF057427=NRDE=PU(3.2=9.8)
A:
PF057427=NRDE=PD(12.8=54.5)
C2:
PF057427=NRDE=PD(1.1=1.9),PF057427=NRDE=FE(40.5=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACATGGAGGAAGGCAAG
R:
CAGCTTCCTCCAGGGAGTCTC
Band lengths:
168-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)