DreEX6010958 @ danRer10
Exon Skipping
Gene
ENSDARG00000056550 | tango2
Description
transport and golgi organization 2 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040808-42]
Coordinates
chr5:26103588-26117937:+
Coord C1 exon
chr5:26103588-26103702
Coord A exon
chr5:26117541-26117608
Coord C2 exon
chr5:26117790-26117937
Length
68 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTTGTTGGATGCAGGGC
3' ss Score
8.56
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTTTTTTGGTGTCCAACTATTTGACCGATAACTTGGACAGTTTGGCATACCTCCGCAAAGTGTCTTCAGAAGCGCATTTATATAATGGCTTCAATCTCCTCACAGCAGAATTCAG
Seq A exon
GGCCAACGAAGACACTTTGTGTTACTATGGAAACAAGGGCAGCTCAGAGCCCATTCATCTCAAAGCAG
Seq C2 exon
GAATCTATGGGTTGAGTAACTCTCTTTTGGAAACTCCGTGGAGGAAACTGCAGCACGGCAAACAGCTGTTCAGCAGTGTAGTGAGCAAAACGCTGCCCCCCGATGGCTTAGTGCAGGAGCTGCTCCACATCCTCAATAACGAGGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056550-'6-12,'6-9,7-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(14.1=100)
A:
PF057427=NRDE=FE(8.6=100)
C2:
PF057427=NRDE=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGTTTGGCATACCTCCG
R:
GCGTTTTGCTCACTACACTGC
Band lengths:
174-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]