GgaEX6013393 @ galGal3
Exon Skipping
Gene
ENSGALG00000002056 | Q5ZI44_CHICK
Description
NA
Coordinates
chr15:1281109-1286409:+
Coord C1 exon
chr15:1281109-1281223
Coord A exon
chr15:1285153-1285223
Coord C2 exon
chr15:1286256-1286409
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTTTGTATTTTTCAGTAC
3' ss Score
8.96
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GTGCTCTTGTAACGAACTTCTTGACTTCAGATCTGGACTGTTACTCTTACTTGAAGAAAGTTTCAGTAGAAGGACATCTTTATAATGGATTTAATTTAATAGCAGCTGACTTGAA
Seq A exon
TACCACCAAAGGAGATGTAATTTGCTACTATGGAAACAAAGGAGACCCAGAACCTGTTTTCTTAAATCCTG
Seq C2 exon
GAATATATGGACTGAGTAATTGTTTGTTGGATACACCATGGAAGAAACTTCAGTATGGGAAACAGCTTTTCACAGAAGTCATCAACAGAAGTCAAGACCTTGCCAAAGAAGACTTGGTGCAGGAGCTCCTTACAGTGATGAATAATCAAGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002056-'11-6,'11-5,12-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(14.0=100)
A:
PF057427=NRDE=FE(8.8=100)
C2:
PF057427=NRDE=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGACTTCAGATCTGGACTGT
R:
TCTGTGAAAAGCTGTTTCCCA
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]