MmuEX6061305 @ mm10
Exon Skipping
Gene
ENSMUSG00000013539 | Tango2
Description
transport and golgi organization 2 [Source:MGI Symbol;Acc:MGI:101825]
Coordinates
chr16:18300827-18310983:-
Coord C1 exon
chr16:18310869-18310983
Coord A exon
chr16:18307970-18308040
Coord C2 exon
chr16:18300827-18301552
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTTTTGGCTTCTATTCACAGCAC
3' ss Score
7.51
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGAACTTGTGTCTCACTTTCTGACCAGTGACATGGACAGCCTGTCCTACCTGAAGAAGGTCTCTACAGAGGGCCACCTGTATAACGGCTTTAACATCATAGCAGCTGACCTGAG
Seq A exon
CACGTCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCTGAGCCTATTGTCTTGACACCAG
Seq C2 exon
AACCAACACCATCATCCTTGTGGATGCAAATGGCCACGTGACCTTCACTGAACGGAGCATGCTGGACAAAGACACCTCTCGCTGGGAGACCAACACCTATGAGTTCACACTACAGAGTTAGCCCCTGCCAGGTTCCAAGGATGCTGTTCCTGAAGGGCCAGCGTGGACAGGAACCTTTCACGGCCACTCTGCAGGTCTGTGGCTCAGCCAGCACCCCTAGGACCAGGTTGTTCTGATTTGTGTCCTCATACTCAGCTCAGGGTCTCTCTTTGTACCAATGGAGAACGACAGAGTTAAATACTAGGCGTGAGTCAGGCCTGGGTATGCCGTATGTGAACACACAGACCTGTTTGTTGCTCAACCCCACTGCCACTGTGTGCACCTGACTGATGAGTAGGATCATGCCTCTCACCTCACACGTTTGGGCAGTGGGTCTCATCCATGGACGGGTAACAAAAGCAGACTCTTTACAGAAACTGGAGATCCTGTATTTGTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013539_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.120 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(14.0=100)
A:
PF057427=NRDE=FE(15.9=100)
C2:
PF057427=NRDE=PD(12.9=85.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACATGGACAGCCTGTC
R:
CGAGAGGTGTCTTTGTCCAGC
Band lengths:
171-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types