RnoEX6057783 @ rn6
Exon Skipping
Gene
ENSRNOG00000030245 | Tango2
Description
transport and golgi organization 2 homolog [Source:RGD Symbol;Acc:1310348]
Coordinates
chr11:86830994-86837730:+
Coord C1 exon
chr11:86830994-86831108
Coord A exon
chr11:86834018-86834088
Coord C2 exon
chr11:86837577-86837730
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTTTGGCTTCTATTCACAGCAC
3' ss Score
7.61
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGAACTTGTGTCTCACTTTCTGACCAGTGACATGGACAGCCTGTCCTACCTGAAGAAGGTCTCTACAGAGGGGCACCTATACAACGGCTTTAACCTCATAGCAGCTGACCTAAG
Seq A exon
CACAGCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCTGAGCCTATTGTCTTGACACCAG
Seq C2 exon
GAACCTATGGGCTAAGCAATGCCCTGCTGGAGACGCCCTGGAAGAAGCTGTGCTTTGGCAAGCAACTCTTCACGGAAGCAGTGGAGCGGAGCGAGTCACTCCCTAAGGACATTCTTGTCACCCAGCTCCTAGAAGTCCTCAACAATGAGGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030245-'18-20,'18-14,20-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(14.0=100)
A:
PF057427=NRDE=FE(8.8=100)
C2:
PF057427=NRDE=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACATGGACAGCCTGTC
R:
CTGCTTCCGTGAAGAGTTGCT
Band lengths:
171-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]