HsaEX0010606 @ hg38
Exon Skipping
Gene
ENSG00000183597 | TANGO2
Description
transport and golgi organization 2 homolog [Source:HGNC Symbol;Acc:HGNC:25439]
Coordinates
chr22:20052465-20056204:+
Coord C1 exon
chr22:20052465-20052584
Coord A exon
chr22:20053437-20053551
Coord C2 exon
chr22:20055943-20056204
Length
115 bp
Sequences
Splice sites
3' ss Seq
CATCTGTCCCCTGCCTACAGGTG
3' ss Score
11.65
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGCTGGACATGGAGGAAGGCAAGGAAGGAGGCACATGGCTGGGCATCAGCACACGTGGCAAGCTGGCAGCACTCACCAACTACCTGCAGCCGCAGCTGGACTGGCAGGCCCGAGGGCGAG
Seq A exon
GTGAACTTGTCACCCACTTTCTGACCACTGACGTGGACAGCTTGTCCTACCTGAAGAAGGTCTCTATGGAGGGCCATCTGTACAATGGCTTCAACCTCATAGCAGCCGACCTGAG
Seq C2 exon
CACAGCAAAGGGAGACGTCATTTGCTACTATGGGAACCGAGGGGAGCCTGATCCTATCGTTTTGACGCCAGGTGAGCCTGCCCTGGCAGCCTGATGGGGTGGGGGACTGTTTCTATGCAGAGGTCACCCTTGTGCTTTTTAGAGACCAGGCACTTGTCATATTACTCTTCTGAGATGACTTTGTGGCCATTTAAGTGCCTTATGGTCTGTGGGCACCTTGCCCTGCACCTGGACACTTCAGAGAGCCCTGGCTCCCTGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183597-'39-23,'39-22,41-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(44.4=100),PF057427=NRDE=PU(3.2=9.8)
A:
PF057427=NRDE=FE(29.5=100),PF057427=NRDE=PU(1.4=2.6)
C2:
PF057427=NRDE=PD(12.8=54.5)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACTCACCAACTACCTGC
R:
TGGCCACAAAGTCATCTCAGA
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development