BtaEX6074415 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045910 | TANGO2
Description
Transport and Golgi organization protein 2 homolog [Source:UniProtKB/TrEMBL;Acc:F6Q0Y7]
Coordinates
chr17:74975254-74976403:+
Coord C1 exon
chr17:74975254-74975373
Coord A exon
chr17:74975724-74975838
Coord C2 exon
chr17:74976331-74976403
Length
115 bp
Sequences
Splice sites
3' ss Seq
GCGTGTGTCCCCTGCCACAGGTG
3' ss Score
9.13
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGCTGGACATGGAGGAAGGCAAGGAGGGCGGCACGTGGCTGGGCATCAGCACGCGGGGCAAGCTGGCCGCGCTCACCAACTACTTGCAGCCGCGGCTGAACCGCAATGCCCGGGGCCGAG
Seq A exon
GTGAGCTCGTGGCCCAGTTCCTGACCTCGGACATGGACAGCTTGTCCTACCTAAAGAAGGTCTCGGCCGAGGGCCATCTGTACAACGGCTTCAACCTCATCGCGGCCGACCTGAG
Seq C2 exon
CGCAGAGAAGGGAGACGTCATTTGCTACTACGGAAACCGGGGGAAGCGGGAGCCTGTTGTCCTGGCGCCAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045910-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(26.5=100)
A:
PF057427=NRDE=FE(25.2=100)
C2:
PF057427=NRDE=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACATGGAGGAAGGCAAG
R:
CTGGCGCCAGGACAACAG
Band lengths:
189-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]