DreEX0077244 @ danRer10
Exon Skipping
Gene
ENSDARG00000056550 | tango2
Description
transport and golgi organization 2 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040808-42]
Coordinates
chr5:26087183-26117608:+
Coord C1 exon
chr5:26087183-26087327
Coord A exon
chr5:26103588-26103702
Coord C2 exon
chr5:26117541-26117608
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTAATTTTATTCAGGTT
3' ss Score
8.63
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TCATGGTCTCATTCTCTTCATCCAGCACCTAGCGCATCCAGTCTCTGACCTCACTGTGATTGAAAACTCCTGCCATCAGTGACCTCCTCATGTGCATCATCTTCTTGAAGTTCGACCCTCGGCCTGCATCCAAAAATGCCTACAG
Seq A exon
GTTTTTTGGTGTCCAACTATTTGACCGATAACTTGGACAGTTTGGCATACCTCCGCAAAGTGTCTTCAGAAGCGCATTTATATAATGGCTTCAATCTCCTCACAGCAGAATTCAG
Seq C2 exon
GGCCAACGAAGACACTTTGTGTTACTATGGAAACAAGGGCAGCTCAGAGCCCATTCATCTCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056550_MULTIEX1-4/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=PU(6.7=94.7)
A:
PF057427=NRDE=FE(14.1=100)
C2:
PF057427=NRDE=FE(8.6=100)
Main Skipping Isoform:
ENSDART00000079064fB6471
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTCATTCTCTTCATCCAGC
R:
CTGCTTTGAGATGAATGGGCTCT
Band lengths:
210-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]