RnoEX6057784 @ rn6
Exon Skipping
Gene
ENSRNOG00000030245 | Tango2
Description
transport and golgi organization 2 homolog [Source:RGD Symbol;Acc:1310348]
Coordinates
chr11:86829499-86834088:+
Coord C1 exon
chr11:86829499-86829618
Coord A exon
chr11:86830994-86831108
Coord C2 exon
chr11:86834018-86834088
Length
115 bp
Sequences
Splice sites
3' ss Seq
GATGTGTGCACTGTCCACAGGTG
3' ss Score
9.93
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGCTCGACATGGAAGAAGGCAAGGCAGGAGGAACATGGCTGGGCATCAGCACACGCGGGAAGCTGGGGGCACTCACCAACTACCTACAGCCCCGGCAAGAGCCAGACGCCCGCGGCAGAG
Seq A exon
GTGAACTTGTGTCTCACTTTCTGACCAGTGACATGGACAGCCTGTCCTACCTGAAGAAGGTCTCTACAGAGGGGCACCTATACAACGGCTTTAACCTCATAGCAGCTGACCTAAG
Seq C2 exon
CACAGCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCTGAGCCTATTGTCTTGACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030245-'17-14,'17-11,18-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.026 C2=0.040
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(14.7=100)
A:
PF057427=NRDE=FE(14.0=100)
C2:
PF057427=NRDE=FE(8.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGACATGGAAGAAGGCAA
R:
TGTCAAGACAATAGGCTCAGGC
Band lengths:
186-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]