GgaEX0002505 @ galGal3
Exon Skipping
Gene
ENSGALG00000002056 | Q5ZI44_CHICK
Description
NA
Coordinates
chr15:1280811-1285223:+
Coord C1 exon
chr15:1280811-1280930
Coord A exon
chr15:1281109-1281223
Coord C2 exon
chr15:1285153-1285223
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTACTTCTTTCTTAGGTG
3' ss Score
10.16
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTCTGGATATGGAGGAGGGAAAAGAAGGTGGGACGTGGCTGGGAATCAGTAAGAAAGGCAGGATGGCAGCCCTGACAAACTATATGCAGCCAACAACTGACAAAAATGCAAAAGGAAGAG
Seq A exon
GTGCTCTTGTAACGAACTTCTTGACTTCAGATCTGGACTGTTACTCTTACTTGAAGAAAGTTTCAGTAGAAGGACATCTTTATAATGGATTTAATTTAATAGCAGCTGACTTGAA
Seq C2 exon
TACCACCAAAGGAGATGTAATTTGCTACTATGGAAACAAAGGAGACCCAGAACCTGTTTTCTTAAATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002056_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(14.7=100)
A:
PF057427=NRDE=FE(14.0=100)
C2:
PF057427=NRDE=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGATATGGAGGAGGGAA
R:
TTTAAGAAAACAGGTTCTGGGTCTCC
Band lengths:
186-301
Functional annotations
There are 0 annotated functions for this event