GgaEX0002507 @ galGal3
Exon Skipping
Gene
ENSGALG00000002056 | Q5ZI44_CHICK
Description
NA
Coordinates
chr15:1271905-1285223:+
Coord C1 exon
chr15:1271905-1272311
Coord A exon
chr15:1280811-1280930
Coord C2 exon
chr15:1285153-1285223
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATTCTTACATATTTTATAAGGTC
3' ss Score
5.28
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
CGGGGGCATTATCATTCCGCAGCGTTCACGCAGAAGGGGGGGAGAGAAAGCGGCACCCCCGCCCGCCCCACACGCGGTGCGGCGACGTGCGCGGCTCTGAGGGGGCGGCTCTGAGGGGGCGGCCCCGCGCTCGAACTACCGCCGCCGGCCCGGCCTCGCGCTGACTCTCCACAGCCGCCGCGCGAACCGGCGCGCGCCGCCAGCAGCCGCGAATTTTCCTATTGGCCGCTTCCTCCGCGCTCGCGCTCAGCAACCAAAATCTCATTGGCTCTCTCCGCTCGCTGGCCGGCCGCCTCGAACCGCGTTGGCCACCGGGGCCGTCCGTCCGAGCGGCGCGGCCCGCCCCCTCGGCGAGCGCGCGGGGCGGCTCGCGGCGGAGGGCGGGAGGATCCGGAGCAGCCGCTGAG
Seq A exon
GTCTGGATATGGAGGAGGGAAAAGAAGGTGGGACGTGGCTGGGAATCAGTAAGAAAGGCAGGATGGCAGCCCTGACAAACTATATGCAGCCAACAACTGACAAAAATGCAAAAGGAAGAG
Seq C2 exon
TACCACCAAAGGAGATGTAATTTGCTACTATGGAAACAAAGGAGACCCAGAACCTGTTTTCTTAAATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002056_MULTIEX1-4/5=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF057427=NRDE=FE(14.7=100)
C2:
PF057427=NRDE=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAATTTTCCTATTGGCCGC
R:
ACAGGTTCTGGGTCTCCTTTGT
Band lengths:
256-376
Functional annotations
There are 0 annotated functions for this event